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Rigbox: An Open-Source Toolbox for Probing Neurons and Behavior
Setting up an experiment in behavioral neuroscience is a complex process that is often managed with ad hoc solutions. To streamline this process, we developed Rigbox, a high-performance, open-source software toolbox that facilitates a modular approach to designing experiments (https://github.com/cor...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Society for Neuroscience
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7363478/ https://www.ncbi.nlm.nih.gov/pubmed/32493756 http://dx.doi.org/10.1523/ENEURO.0406-19.2020 |
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author | Bhagat, Jai Wells, Miles J. Harris, Kenneth D. Carandini, Matteo Burgess, Christopher P. |
author_facet | Bhagat, Jai Wells, Miles J. Harris, Kenneth D. Carandini, Matteo Burgess, Christopher P. |
author_sort | Bhagat, Jai |
collection | PubMed |
description | Setting up an experiment in behavioral neuroscience is a complex process that is often managed with ad hoc solutions. To streamline this process, we developed Rigbox, a high-performance, open-source software toolbox that facilitates a modular approach to designing experiments (https://github.com/cortex-lab/Rigbox). Rigbox simplifies hardware input-output, time aligns datastreams from multiple sources, communicates with remote databases, and implements visual and auditory stimuli presentation. Its main submodule, Signals, allows intuitive programming of behavioral tasks. Here we illustrate its function with the following two interactive examples: a human psychophysics experiment, and the game of Pong. We give an overview of running experiments in Rigbox, provide benchmarks, and conclude with a discussion on the extensibility of the software and comparisons with similar toolboxes. Rigbox runs in MATLAB, with Java components to handle network communication, and a C library to boost performance. |
format | Online Article Text |
id | pubmed-7363478 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Society for Neuroscience |
record_format | MEDLINE/PubMed |
spelling | pubmed-73634782020-07-16 Rigbox: An Open-Source Toolbox for Probing Neurons and Behavior Bhagat, Jai Wells, Miles J. Harris, Kenneth D. Carandini, Matteo Burgess, Christopher P. eNeuro Open Source Tools and Methods Setting up an experiment in behavioral neuroscience is a complex process that is often managed with ad hoc solutions. To streamline this process, we developed Rigbox, a high-performance, open-source software toolbox that facilitates a modular approach to designing experiments (https://github.com/cortex-lab/Rigbox). Rigbox simplifies hardware input-output, time aligns datastreams from multiple sources, communicates with remote databases, and implements visual and auditory stimuli presentation. Its main submodule, Signals, allows intuitive programming of behavioral tasks. Here we illustrate its function with the following two interactive examples: a human psychophysics experiment, and the game of Pong. We give an overview of running experiments in Rigbox, provide benchmarks, and conclude with a discussion on the extensibility of the software and comparisons with similar toolboxes. Rigbox runs in MATLAB, with Java components to handle network communication, and a C library to boost performance. Society for Neuroscience 2020-07-09 /pmc/articles/PMC7363478/ /pubmed/32493756 http://dx.doi.org/10.1523/ENEURO.0406-19.2020 Text en Copyright © 2020 Bhagat et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution and reproduction in any medium provided that the original work is properly attributed. |
spellingShingle | Open Source Tools and Methods Bhagat, Jai Wells, Miles J. Harris, Kenneth D. Carandini, Matteo Burgess, Christopher P. Rigbox: An Open-Source Toolbox for Probing Neurons and Behavior |
title | Rigbox: An Open-Source Toolbox for Probing Neurons and Behavior |
title_full | Rigbox: An Open-Source Toolbox for Probing Neurons and Behavior |
title_fullStr | Rigbox: An Open-Source Toolbox for Probing Neurons and Behavior |
title_full_unstemmed | Rigbox: An Open-Source Toolbox for Probing Neurons and Behavior |
title_short | Rigbox: An Open-Source Toolbox for Probing Neurons and Behavior |
title_sort | rigbox: an open-source toolbox for probing neurons and behavior |
topic | Open Source Tools and Methods |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7363478/ https://www.ncbi.nlm.nih.gov/pubmed/32493756 http://dx.doi.org/10.1523/ENEURO.0406-19.2020 |
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