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Mixture distributions in a stochastic gene expression model with delayed feedback: a WKB approximation approach

Noise in gene expression can be substantively affected by the presence of production delay. Here we consider a mathematical model with bursty production of protein, a one-step production delay (the passage of which activates the protein), and feedback in the frequency of bursts. We specifically focu...

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Autores principales: Bokes, Pavol, Borri, Alessandro, Palumbo, Pasquale, Singh, Abhyudai
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7363733/
https://www.ncbi.nlm.nih.gov/pubmed/32583030
http://dx.doi.org/10.1007/s00285-020-01512-y
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author Bokes, Pavol
Borri, Alessandro
Palumbo, Pasquale
Singh, Abhyudai
author_facet Bokes, Pavol
Borri, Alessandro
Palumbo, Pasquale
Singh, Abhyudai
author_sort Bokes, Pavol
collection PubMed
description Noise in gene expression can be substantively affected by the presence of production delay. Here we consider a mathematical model with bursty production of protein, a one-step production delay (the passage of which activates the protein), and feedback in the frequency of bursts. We specifically focus on examining the steady-state behaviour of the model in the slow-activation (i.e. large-delay) regime. Using a formal asymptotic approach, we derive an autonomous ordinary differential equation for the inactive protein that applies in the slow-activation regime. If the differential equation is monostable, the steady-state distribution of the inactive (active) protein is approximated by a single Gaussian (Poisson) mode located at the globally stable fixed point of the differential equation. If the differential equation is bistable (due to cooperative positive feedback), the steady-state distribution of the inactive (active) protein is approximated by a mixture of Gaussian (Poisson) modes located at the stable fixed points; the weights of the modes are determined from a WKB approximation to the stationary distribution. The asymptotic results are compared to numerical solutions of the chemical master equation.
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spelling pubmed-73637332020-07-20 Mixture distributions in a stochastic gene expression model with delayed feedback: a WKB approximation approach Bokes, Pavol Borri, Alessandro Palumbo, Pasquale Singh, Abhyudai J Math Biol Article Noise in gene expression can be substantively affected by the presence of production delay. Here we consider a mathematical model with bursty production of protein, a one-step production delay (the passage of which activates the protein), and feedback in the frequency of bursts. We specifically focus on examining the steady-state behaviour of the model in the slow-activation (i.e. large-delay) regime. Using a formal asymptotic approach, we derive an autonomous ordinary differential equation for the inactive protein that applies in the slow-activation regime. If the differential equation is monostable, the steady-state distribution of the inactive (active) protein is approximated by a single Gaussian (Poisson) mode located at the globally stable fixed point of the differential equation. If the differential equation is bistable (due to cooperative positive feedback), the steady-state distribution of the inactive (active) protein is approximated by a mixture of Gaussian (Poisson) modes located at the stable fixed points; the weights of the modes are determined from a WKB approximation to the stationary distribution. The asymptotic results are compared to numerical solutions of the chemical master equation. Springer Berlin Heidelberg 2020-06-24 2020 /pmc/articles/PMC7363733/ /pubmed/32583030 http://dx.doi.org/10.1007/s00285-020-01512-y Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Bokes, Pavol
Borri, Alessandro
Palumbo, Pasquale
Singh, Abhyudai
Mixture distributions in a stochastic gene expression model with delayed feedback: a WKB approximation approach
title Mixture distributions in a stochastic gene expression model with delayed feedback: a WKB approximation approach
title_full Mixture distributions in a stochastic gene expression model with delayed feedback: a WKB approximation approach
title_fullStr Mixture distributions in a stochastic gene expression model with delayed feedback: a WKB approximation approach
title_full_unstemmed Mixture distributions in a stochastic gene expression model with delayed feedback: a WKB approximation approach
title_short Mixture distributions in a stochastic gene expression model with delayed feedback: a WKB approximation approach
title_sort mixture distributions in a stochastic gene expression model with delayed feedback: a wkb approximation approach
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7363733/
https://www.ncbi.nlm.nih.gov/pubmed/32583030
http://dx.doi.org/10.1007/s00285-020-01512-y
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