Cargando…
Bioinformatics analysis and identification of circular RNAs promoting the osteogenic differentiation of human bone marrow mesenchymal stem cells on titanium treated by surface mechanical attrition
BACKGROUND: To analyze and identify the circular RNAs (circRNAs) involved in promoting the osteogenic differentiation of human bone mesenchymal stem cells (hBMSCs) on titanium by surface mechanical attrition treatment (SMAT). METHODS: The experimental material was SMAT titanium and the control mater...
Autores principales: | , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7365136/ https://www.ncbi.nlm.nih.gov/pubmed/32742764 http://dx.doi.org/10.7717/peerj.9292 |
_version_ | 1783559994027802624 |
---|---|
author | Zhu, Shanshan Zhu, Yuhe Wang, Zhenbo Liang, Chen Cao, Nanjue Yan, Ming Gao, Fei Liu, Jie Wang, Wei |
author_facet | Zhu, Shanshan Zhu, Yuhe Wang, Zhenbo Liang, Chen Cao, Nanjue Yan, Ming Gao, Fei Liu, Jie Wang, Wei |
author_sort | Zhu, Shanshan |
collection | PubMed |
description | BACKGROUND: To analyze and identify the circular RNAs (circRNAs) involved in promoting the osteogenic differentiation of human bone mesenchymal stem cells (hBMSCs) on titanium by surface mechanical attrition treatment (SMAT). METHODS: The experimental material was SMAT titanium and the control material was annealed titanium. Cell Counting Kits-8 (CCK-8) was used to detect the proliferation of hBMSCs, and alkaline phosphatase (ALP) activity and alizarin red staining were used to detect the osteogenic differentiation of hBMSCs on the sample surfaces. The bioinformatics prediction software miwalk3.0 was used to construct competing endogenous RNA (ceRNA) networks by predicting circRNAs with osteogenesis-related messenger RNAs (mRNAs) and microRNAs (miRNAs). The circRNAs located at the key positions in the networks were selected and analyzed by quantitative real-time PCR (QRT-PCR). RESULTS: Compared with annealed titanium, SMAT titanium could promote the proliferation and osteogenic differentiation of hBMSCs. The total number of predicted circRNAs was 51. Among these, 30 circRNAs and 8 miRNAs constituted 6 ceRNA networks. Circ-LTBP2 was selected for verification. QRT-PCR results showed that the expression levels of hsa_circ_0032599, hsa_circ_0032600 and hsa_circ_0032601 were upregulated in the experimental group compared with those in the control group; the differential expression of hsa_circ_0032600 was the most obvious and statistically significant, with a fold change (FC) = 4.25 ± 1.60, p-values (p) < 0.05. |
format | Online Article Text |
id | pubmed-7365136 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-73651362020-07-31 Bioinformatics analysis and identification of circular RNAs promoting the osteogenic differentiation of human bone marrow mesenchymal stem cells on titanium treated by surface mechanical attrition Zhu, Shanshan Zhu, Yuhe Wang, Zhenbo Liang, Chen Cao, Nanjue Yan, Ming Gao, Fei Liu, Jie Wang, Wei PeerJ Bioinformatics BACKGROUND: To analyze and identify the circular RNAs (circRNAs) involved in promoting the osteogenic differentiation of human bone mesenchymal stem cells (hBMSCs) on titanium by surface mechanical attrition treatment (SMAT). METHODS: The experimental material was SMAT titanium and the control material was annealed titanium. Cell Counting Kits-8 (CCK-8) was used to detect the proliferation of hBMSCs, and alkaline phosphatase (ALP) activity and alizarin red staining were used to detect the osteogenic differentiation of hBMSCs on the sample surfaces. The bioinformatics prediction software miwalk3.0 was used to construct competing endogenous RNA (ceRNA) networks by predicting circRNAs with osteogenesis-related messenger RNAs (mRNAs) and microRNAs (miRNAs). The circRNAs located at the key positions in the networks were selected and analyzed by quantitative real-time PCR (QRT-PCR). RESULTS: Compared with annealed titanium, SMAT titanium could promote the proliferation and osteogenic differentiation of hBMSCs. The total number of predicted circRNAs was 51. Among these, 30 circRNAs and 8 miRNAs constituted 6 ceRNA networks. Circ-LTBP2 was selected for verification. QRT-PCR results showed that the expression levels of hsa_circ_0032599, hsa_circ_0032600 and hsa_circ_0032601 were upregulated in the experimental group compared with those in the control group; the differential expression of hsa_circ_0032600 was the most obvious and statistically significant, with a fold change (FC) = 4.25 ± 1.60, p-values (p) < 0.05. PeerJ Inc. 2020-07-13 /pmc/articles/PMC7365136/ /pubmed/32742764 http://dx.doi.org/10.7717/peerj.9292 Text en © 2020 Zhu et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. |
spellingShingle | Bioinformatics Zhu, Shanshan Zhu, Yuhe Wang, Zhenbo Liang, Chen Cao, Nanjue Yan, Ming Gao, Fei Liu, Jie Wang, Wei Bioinformatics analysis and identification of circular RNAs promoting the osteogenic differentiation of human bone marrow mesenchymal stem cells on titanium treated by surface mechanical attrition |
title | Bioinformatics analysis and identification of circular RNAs promoting the osteogenic differentiation of human bone marrow mesenchymal stem cells on titanium treated by surface mechanical attrition |
title_full | Bioinformatics analysis and identification of circular RNAs promoting the osteogenic differentiation of human bone marrow mesenchymal stem cells on titanium treated by surface mechanical attrition |
title_fullStr | Bioinformatics analysis and identification of circular RNAs promoting the osteogenic differentiation of human bone marrow mesenchymal stem cells on titanium treated by surface mechanical attrition |
title_full_unstemmed | Bioinformatics analysis and identification of circular RNAs promoting the osteogenic differentiation of human bone marrow mesenchymal stem cells on titanium treated by surface mechanical attrition |
title_short | Bioinformatics analysis and identification of circular RNAs promoting the osteogenic differentiation of human bone marrow mesenchymal stem cells on titanium treated by surface mechanical attrition |
title_sort | bioinformatics analysis and identification of circular rnas promoting the osteogenic differentiation of human bone marrow mesenchymal stem cells on titanium treated by surface mechanical attrition |
topic | Bioinformatics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7365136/ https://www.ncbi.nlm.nih.gov/pubmed/32742764 http://dx.doi.org/10.7717/peerj.9292 |
work_keys_str_mv | AT zhushanshan bioinformaticsanalysisandidentificationofcircularrnaspromotingtheosteogenicdifferentiationofhumanbonemarrowmesenchymalstemcellsontitaniumtreatedbysurfacemechanicalattrition AT zhuyuhe bioinformaticsanalysisandidentificationofcircularrnaspromotingtheosteogenicdifferentiationofhumanbonemarrowmesenchymalstemcellsontitaniumtreatedbysurfacemechanicalattrition AT wangzhenbo bioinformaticsanalysisandidentificationofcircularrnaspromotingtheosteogenicdifferentiationofhumanbonemarrowmesenchymalstemcellsontitaniumtreatedbysurfacemechanicalattrition AT liangchen bioinformaticsanalysisandidentificationofcircularrnaspromotingtheosteogenicdifferentiationofhumanbonemarrowmesenchymalstemcellsontitaniumtreatedbysurfacemechanicalattrition AT caonanjue bioinformaticsanalysisandidentificationofcircularrnaspromotingtheosteogenicdifferentiationofhumanbonemarrowmesenchymalstemcellsontitaniumtreatedbysurfacemechanicalattrition AT yanming bioinformaticsanalysisandidentificationofcircularrnaspromotingtheosteogenicdifferentiationofhumanbonemarrowmesenchymalstemcellsontitaniumtreatedbysurfacemechanicalattrition AT gaofei bioinformaticsanalysisandidentificationofcircularrnaspromotingtheosteogenicdifferentiationofhumanbonemarrowmesenchymalstemcellsontitaniumtreatedbysurfacemechanicalattrition AT liujie bioinformaticsanalysisandidentificationofcircularrnaspromotingtheosteogenicdifferentiationofhumanbonemarrowmesenchymalstemcellsontitaniumtreatedbysurfacemechanicalattrition AT wangwei bioinformaticsanalysisandidentificationofcircularrnaspromotingtheosteogenicdifferentiationofhumanbonemarrowmesenchymalstemcellsontitaniumtreatedbysurfacemechanicalattrition |