Cargando…

Precise annotation of tick mitochondrial genomes reveals multiple copy number variation of short tandem repeats and one transposon-like element

BACKGROUND: In the present study, we used long-PCR amplification coupled with Next-Generation Sequencing (NGS) to obtain complete mitochondrial (mt) genomes of individual ticks and unprecedently performed precise annotation of these mt genomes. We aimed to: (1) develop a simple, cost-effective and a...

Descripción completa

Detalles Bibliográficos
Autores principales:	Chen, Ze, Xuan, Yibo, Liang, Guangcai, Yang, Xiaolong, Yu, Zhijun, Barker, Stephen C., Kelava, Samuel, Bu, Wenjun, Liu, Jingze, Gao, Shan
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2020
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7367389/ https://www.ncbi.nlm.nih.gov/pubmed/32680454 http://dx.doi.org/10.1186/s12864-020-06906-2

Ejemplares similares

Tick-borne pathogens and the vector potential of ticks in China
por: Yu, Zhijun, et al.
Publicado: (2015)

Multiple Copies of a qnrB19 Gene Are Carried by Tandem Repeats of an IS26 Composite Transposon in an Escherichia coli Plasmid
por: Argueta, Felix, et al.
Publicado: (2022)

TRASH: Tandem Repeat Annotation and Structural Hierarchy
por: Wlodzimierz, Piotr, et al.
Publicado: (2023)

Tandem repeat copy-number variation in protein-coding regions of human genes
por: O'Dushlaine, Colm T, et al.
Publicado: (2005)

vamos: variable-number tandem repeats annotation using efficient motif sets
por: Ren, Jingwen, et al.
Publicado: (2023)

TransposonUltimate: software for transposon classification, annotation and detection
por: Riehl, Kevin, et al.
Publicado: (2022)

Expression, tandem repeat copy number variation and stability of four macrosatellite arrays in the human genome
por: Tremblay, Deanna C, et al.
Publicado: (2010)

Characterization of α-isopropylmalate synthases containing different copy numbers of tandem repeats in Mycobacterium tuberculosis
por: Yindeeyoungyeon, Wandee, et al.
Publicado: (2009)

A review of argasid ticks and associated pathogens of China
por: Chen, Ze, et al.
Publicado: (2022)

Full-length genome sequence of segmented RNA virus from ticks was obtained using small RNA sequencing data
por: Xu, Xiaofeng, et al.
Publicado: (2020)

Copy Number of the Transposon, Pokey, in rDNA Is Positively Correlated with rDNA Copy Number in Daphnia obtusa
por: LeRiche, Kaitlynn, et al.
Publicado: (2014)

RepeatsDB-lite: a web server for unit annotation of tandem repeat proteins
por: Hirsh, Layla, et al.
Publicado: (2018)

Physiological Changes in Barley mlo-11 Powdery Mildew Resistance Conditioned by Tandem Repeat Copy Number
por: Ge, Cynthia, et al.
Publicado: (2020)

Genome sequencing identifies rare tandem repeat expansions and copy number variants in Lennox–Gastaut syndrome
por: Qaiser, Farah, et al.
Publicado: (2021)

Correction: Copy Number of the Transposon, Pokey, in rDNA Is Positively Correlated with rDNA Copy Number in Daphnia obtusa
Publicado: (2015)

Detection of Francisella tularensis in ticks and identification of their genotypes using multiple-locus variable-number tandem repeat analysis
por: Zhang, Fang, et al.
Publicado: (2008)

Reading the tea leaves: Dead transposon copies reveal novel host and transposon biology
por: McLaughlin, Richard N.
Publicado: (2018)

Copy number variation of ribosomal DNA and Pokey transposons in natural populations of Daphnia
por: Eagle, Shannon HC, et al.
Publicado: (2012)

Reliable transgene-independent method for determining Sleeping Beauty transposon copy numbers
por: Kolacsek, Orsolya, et al.
Publicado: (2011)

The molecular and functional characterization of ferritins in the hard tick Hyalomma rufipes
por: Gao, Zhihua, et al.
Publicado: (2022)

Repeated horizontal transfers of four DNA transposons in invertebrates and bats
por: Tang, Zhou, et al.
Publicado: (2015)

Tick mitochondrial genomes: structural characteristics and phylogenetic implications
por: Wang, Tianhong, et al.
Publicado: (2019)

Correction: Reliable transgene-independent method for determining sleeping beauty transposon copy numbers
por: Kolacsek, Orsolya, et al.
Publicado: (2013)

GtTR: Bayesian estimation of absolute tandem repeat copy number using sequence capture and high throughput sequencing
por: Ganesamoorthy, Devika, et al.
Publicado: (2018)

Digital Genotyping of Macrosatellites and Multicopy Genes Reveals Novel Biological Functions Associated with Copy Number Variation of Large Tandem Repeats
por: Brahmachary, Manisha, et al.
Publicado: (2014)

Tandemly repeated NBPF HOR copies (Olduvai triplets): Possible impact on human brain evolution
por: Glunčić, Matko, et al.
Publicado: (2022)

iCopyDAV: Integrated platform for copy number variations—Detection, annotation and visualization
por: Dharanipragada, Prashanthi, et al.
Publicado: (2018)

Detection and reconstruction of tandemly organized de novo copy number variations
por: He, Dan, et al.
Publicado: (2010)

Tandem Repeats, High Copy Number and Remarkable Diel Expression Rhythm of Form II RuBisCO in Prorocentrum donghaiense (Dinophyceae)
por: Shi, Xinguo, et al.
Publicado: (2013)

Comparative Genomics Reveals the High Copy Number Variation of a Retro Transposon in Different Magnaporthe Isolates
por: Singh, Pankaj Kumar, et al.
Publicado: (2019)

The Annotation of Zebrafish Enhancer Trap Lines Generated with PB Transposon
por: Jia, Wenzhu, et al.
Publicado: (2022)

Symbiont dynamics of the Tibetan tick Haemaphysalis tibetensis (Acari: Ixodidae)
por: Wang, Rongrong, et al.
Publicado: (2017)

Doenitin-1: A novel Kunitz family protein with versatile functions during feeding and reproduction of the tick Haemaphysalis doenitzi
por: Lu, Jialin, et al.
Publicado: (2022)

Tandem repeat disorders
por: Ryan, Calen P
Publicado: (2019)

Learning smoothing models of copy number profiles using breakpoint annotations
por: Hocking, Toby Dylan, et al.
Publicado: (2013)

FocalCall: An R Package for the Annotation of Focal Copy Number Aberrations
por: Krijgsman, Oscar, et al.
Publicado: (2014)

ClassifyCNV: a tool for clinical annotation of copy-number variants
por: Gurbich, Tatiana A., et al.
Publicado: (2020)

The first discovery of Tc1 transposons in yeast
por: Chang, Jia, et al.
Publicado: (2023)

Targeted genotyping of variable number tandem repeats with adVNTR
por: Bakhtiari, Mehrdad, et al.
Publicado: (2018)

Variable Number Tandem Repeats in the Mitochondrial DNA of Lentinula edodes
por: Kim, Sinil, et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_k4j1qou0m6rpc0o6m6pgkpsqsr