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Stromal score as a prognostic factor in primary gastric cancer and close association with tumor immune microenvironment
BACKGROUND: Gastric cancer remains one of the major causes for tumor‐related deaths worldwide. Our study aimed to provide an understanding of primary gastric cancer and prompt its clinical diagnosis and treatment. METHODS: We integrated the expression profiles and overall survival information of pri...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7367639/ https://www.ncbi.nlm.nih.gov/pubmed/32432377 http://dx.doi.org/10.1002/cam4.2801 |
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author | Mao, Min Yu, Qingliang Huang, Rongzhi Lu, Yunxin Wang, Zhen Liao, Liang |
author_facet | Mao, Min Yu, Qingliang Huang, Rongzhi Lu, Yunxin Wang, Zhen Liao, Liang |
author_sort | Mao, Min |
collection | PubMed |
description | BACKGROUND: Gastric cancer remains one of the major causes for tumor‐related deaths worldwide. Our study aimed to provide an understanding of primary gastric cancer and prompt its clinical diagnosis and treatment. METHODS: We integrated the expression profiles and overall survival information of primary gastric cancer in TCGA and GEO database and estimated the stromal score of each sample by the estimate R package. Stromal score and clinicopathologic characteristics associated with overall survival were analyzed by using Cox regression and the Kaplan‐Meier method. Gene set enrichment analysis (GSEA) and KEGG analysis were performed to explore the potential molecular mechanism in TCGA dataset. The relationship between immunotherapy‐associated markers or immune cell types and stromal score was explored by using Pearson correlation analysis. RESULTS: A total of 796 samples were collected for the analysis. Patients with stromal score‐high showed poor overall survival (P < .01, HR: 1.407, 95% CI: 1.144‐1.731) and identified as an independent prognostic factor. KEGG analysis revealed that stromal score actively involved in diverse tumor‐associated pathways. GSEA analysis also revealed stromal score associated with diverse immune‐related biological processes. Furthermore, stromal score was related with immunotherapy‐associated markers and multiple immune cells. CONCLUSION: Our results showed that stromal score could serve as a potential prognostic biomarker in primary gastric cancer and play an important role in the recognition, surveillance, and prognosis of gastric cancer. |
format | Online Article Text |
id | pubmed-7367639 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-73676392020-07-20 Stromal score as a prognostic factor in primary gastric cancer and close association with tumor immune microenvironment Mao, Min Yu, Qingliang Huang, Rongzhi Lu, Yunxin Wang, Zhen Liao, Liang Cancer Med Clinical Cancer Research BACKGROUND: Gastric cancer remains one of the major causes for tumor‐related deaths worldwide. Our study aimed to provide an understanding of primary gastric cancer and prompt its clinical diagnosis and treatment. METHODS: We integrated the expression profiles and overall survival information of primary gastric cancer in TCGA and GEO database and estimated the stromal score of each sample by the estimate R package. Stromal score and clinicopathologic characteristics associated with overall survival were analyzed by using Cox regression and the Kaplan‐Meier method. Gene set enrichment analysis (GSEA) and KEGG analysis were performed to explore the potential molecular mechanism in TCGA dataset. The relationship between immunotherapy‐associated markers or immune cell types and stromal score was explored by using Pearson correlation analysis. RESULTS: A total of 796 samples were collected for the analysis. Patients with stromal score‐high showed poor overall survival (P < .01, HR: 1.407, 95% CI: 1.144‐1.731) and identified as an independent prognostic factor. KEGG analysis revealed that stromal score actively involved in diverse tumor‐associated pathways. GSEA analysis also revealed stromal score associated with diverse immune‐related biological processes. Furthermore, stromal score was related with immunotherapy‐associated markers and multiple immune cells. CONCLUSION: Our results showed that stromal score could serve as a potential prognostic biomarker in primary gastric cancer and play an important role in the recognition, surveillance, and prognosis of gastric cancer. John Wiley and Sons Inc. 2020-05-20 /pmc/articles/PMC7367639/ /pubmed/32432377 http://dx.doi.org/10.1002/cam4.2801 Text en © 2019 The Authors. Cancer Medicine published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Clinical Cancer Research Mao, Min Yu, Qingliang Huang, Rongzhi Lu, Yunxin Wang, Zhen Liao, Liang Stromal score as a prognostic factor in primary gastric cancer and close association with tumor immune microenvironment |
title | Stromal score as a prognostic factor in primary gastric cancer and close association with tumor immune microenvironment |
title_full | Stromal score as a prognostic factor in primary gastric cancer and close association with tumor immune microenvironment |
title_fullStr | Stromal score as a prognostic factor in primary gastric cancer and close association with tumor immune microenvironment |
title_full_unstemmed | Stromal score as a prognostic factor in primary gastric cancer and close association with tumor immune microenvironment |
title_short | Stromal score as a prognostic factor in primary gastric cancer and close association with tumor immune microenvironment |
title_sort | stromal score as a prognostic factor in primary gastric cancer and close association with tumor immune microenvironment |
topic | Clinical Cancer Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7367639/ https://www.ncbi.nlm.nih.gov/pubmed/32432377 http://dx.doi.org/10.1002/cam4.2801 |
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