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Fluctuation relations and fitness landscapes of growing cell populations

We construct a pathwise formulation of a growing population of cells, based on two different samplings of lineages within the population, namely the forward and backward samplings. We show that a general symmetry relation, called fluctuation relation relates these two samplings, independently of the...

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Autores principales: Genthon, Arthur, Lacoste, David
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7367869/
https://www.ncbi.nlm.nih.gov/pubmed/32681104
http://dx.doi.org/10.1038/s41598-020-68444-x
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author Genthon, Arthur
Lacoste, David
author_facet Genthon, Arthur
Lacoste, David
author_sort Genthon, Arthur
collection PubMed
description We construct a pathwise formulation of a growing population of cells, based on two different samplings of lineages within the population, namely the forward and backward samplings. We show that a general symmetry relation, called fluctuation relation relates these two samplings, independently of the model used to generate divisions and growth in the cell population. These relations lead to estimators of the population growth rate, which can be very efficient as we demonstrate by an analysis of a set of mother machine data. These fluctuation relations lead to general and important inequalities between the mean number of divisions and the doubling time of the population. We also study the fitness landscape, a concept based on the two samplings mentioned above, which quantifies the correlations between a phenotypic trait of interest and the number of divisions. We obtain explicit results when the trait is the age or the size, for age and size-controlled models.
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spelling pubmed-73678692020-07-20 Fluctuation relations and fitness landscapes of growing cell populations Genthon, Arthur Lacoste, David Sci Rep Article We construct a pathwise formulation of a growing population of cells, based on two different samplings of lineages within the population, namely the forward and backward samplings. We show that a general symmetry relation, called fluctuation relation relates these two samplings, independently of the model used to generate divisions and growth in the cell population. These relations lead to estimators of the population growth rate, which can be very efficient as we demonstrate by an analysis of a set of mother machine data. These fluctuation relations lead to general and important inequalities between the mean number of divisions and the doubling time of the population. We also study the fitness landscape, a concept based on the two samplings mentioned above, which quantifies the correlations between a phenotypic trait of interest and the number of divisions. We obtain explicit results when the trait is the age or the size, for age and size-controlled models. Nature Publishing Group UK 2020-07-17 /pmc/articles/PMC7367869/ /pubmed/32681104 http://dx.doi.org/10.1038/s41598-020-68444-x Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Genthon, Arthur
Lacoste, David
Fluctuation relations and fitness landscapes of growing cell populations
title Fluctuation relations and fitness landscapes of growing cell populations
title_full Fluctuation relations and fitness landscapes of growing cell populations
title_fullStr Fluctuation relations and fitness landscapes of growing cell populations
title_full_unstemmed Fluctuation relations and fitness landscapes of growing cell populations
title_short Fluctuation relations and fitness landscapes of growing cell populations
title_sort fluctuation relations and fitness landscapes of growing cell populations
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7367869/
https://www.ncbi.nlm.nih.gov/pubmed/32681104
http://dx.doi.org/10.1038/s41598-020-68444-x
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