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The EU-ToxRisk method documentation, data processing and chemical testing pipeline for the regulatory use of new approach methods

Hazard assessment, based on new approach methods (NAM), requires the use of batteries of assays, where individual tests may be contributed by different laboratories. A unified strategy for such collaborative testing is presented. It details all procedures required to allow test information to be usa...

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Autores principales: Krebs, Alice, van Vugt-Lussenburg, Barbara M. A., Waldmann, Tanja, Albrecht, Wiebke, Boei, Jan, ter Braak, Bas, Brajnik, Maja, Braunbeck, Thomas, Brecklinghaus, Tim, Busquet, Francois, Dinnyes, Andras, Dokler, Joh, Dolde, Xenia, Exner, Thomas E., Fisher, Ciarán, Fluri, David, Forsby, Anna, Hengstler, Jan G., Holzer, Anna-Katharina, Janstova, Zofia, Jennings, Paul, Kisitu, Jaffar, Kobolak, Julianna, Kumar, Manoj, Limonciel, Alice, Lundqvist, Jessica, Mihalik, Balázs, Moritz, Wolfgang, Pallocca, Giorgia, Ulloa, Andrea Paola Cediel, Pastor, Manuel, Rovida, Costanza, Sarkans, Ugis, Schimming, Johannes P., Schmidt, Bela Z., Stöber, Regina, Strassfeld, Tobias, van de Water, Bob, Wilmes, Anja, van der Burg, Bart, Verfaillie, Catherine M., von Hellfeld, Rebecca, Vrieling, Harry, Vrijenhoek, Nanette G., Leist, Marcel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7367925/
https://www.ncbi.nlm.nih.gov/pubmed/32632539
http://dx.doi.org/10.1007/s00204-020-02802-6
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author Krebs, Alice
van Vugt-Lussenburg, Barbara M. A.
Waldmann, Tanja
Albrecht, Wiebke
Boei, Jan
ter Braak, Bas
Brajnik, Maja
Braunbeck, Thomas
Brecklinghaus, Tim
Busquet, Francois
Dinnyes, Andras
Dokler, Joh
Dolde, Xenia
Exner, Thomas E.
Fisher, Ciarán
Fluri, David
Forsby, Anna
Hengstler, Jan G.
Holzer, Anna-Katharina
Janstova, Zofia
Jennings, Paul
Kisitu, Jaffar
Kobolak, Julianna
Kumar, Manoj
Limonciel, Alice
Lundqvist, Jessica
Mihalik, Balázs
Moritz, Wolfgang
Pallocca, Giorgia
Ulloa, Andrea Paola Cediel
Pastor, Manuel
Rovida, Costanza
Sarkans, Ugis
Schimming, Johannes P.
Schmidt, Bela Z.
Stöber, Regina
Strassfeld, Tobias
van de Water, Bob
Wilmes, Anja
van der Burg, Bart
Verfaillie, Catherine M.
von Hellfeld, Rebecca
Vrieling, Harry
Vrijenhoek, Nanette G.
Leist, Marcel
author_facet Krebs, Alice
van Vugt-Lussenburg, Barbara M. A.
Waldmann, Tanja
Albrecht, Wiebke
Boei, Jan
ter Braak, Bas
Brajnik, Maja
Braunbeck, Thomas
Brecklinghaus, Tim
Busquet, Francois
Dinnyes, Andras
Dokler, Joh
Dolde, Xenia
Exner, Thomas E.
Fisher, Ciarán
Fluri, David
Forsby, Anna
Hengstler, Jan G.
Holzer, Anna-Katharina
Janstova, Zofia
Jennings, Paul
Kisitu, Jaffar
Kobolak, Julianna
Kumar, Manoj
Limonciel, Alice
Lundqvist, Jessica
Mihalik, Balázs
Moritz, Wolfgang
Pallocca, Giorgia
Ulloa, Andrea Paola Cediel
Pastor, Manuel
Rovida, Costanza
Sarkans, Ugis
Schimming, Johannes P.
Schmidt, Bela Z.
Stöber, Regina
Strassfeld, Tobias
van de Water, Bob
Wilmes, Anja
van der Burg, Bart
Verfaillie, Catherine M.
von Hellfeld, Rebecca
Vrieling, Harry
Vrijenhoek, Nanette G.
Leist, Marcel
author_sort Krebs, Alice
collection PubMed
description Hazard assessment, based on new approach methods (NAM), requires the use of batteries of assays, where individual tests may be contributed by different laboratories. A unified strategy for such collaborative testing is presented. It details all procedures required to allow test information to be usable for integrated hazard assessment, strategic project decisions and/or for regulatory purposes. The EU-ToxRisk project developed a strategy to provide regulatorily valid data, and exemplified this using a panel of > 20 assays (with > 50 individual endpoints), each exposed to 19 well-known test compounds (e.g. rotenone, colchicine, mercury, paracetamol, rifampicine, paraquat, taxol). Examples of strategy implementation are provided for all aspects required to ensure data validity: (i) documentation of test methods in a publicly accessible database; (ii) deposition of standard operating procedures (SOP) at the European Union DB-ALM repository; (iii) test readiness scoring accoding to defined criteria; (iv) disclosure of the pipeline for data processing; (v) link of uncertainty measures and metadata to the data; (vi) definition of test chemicals, their handling and their behavior in test media; (vii) specification of the test purpose and overall evaluation plans. Moreover, data generation was exemplified by providing results from 25 reporter assays. A complete evaluation of the entire test battery will be described elsewhere. A major learning from the retrospective analysis of this large testing project was the need for thorough definitions of the above strategy aspects, ideally in form of a study pre-registration, to allow adequate interpretation of the data and to ensure overall scientific/toxicological validity. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s00204-020-02802-6) contains supplementary material, which is available to authorized users.
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spelling pubmed-73679252020-07-21 The EU-ToxRisk method documentation, data processing and chemical testing pipeline for the regulatory use of new approach methods Krebs, Alice van Vugt-Lussenburg, Barbara M. A. Waldmann, Tanja Albrecht, Wiebke Boei, Jan ter Braak, Bas Brajnik, Maja Braunbeck, Thomas Brecklinghaus, Tim Busquet, Francois Dinnyes, Andras Dokler, Joh Dolde, Xenia Exner, Thomas E. Fisher, Ciarán Fluri, David Forsby, Anna Hengstler, Jan G. Holzer, Anna-Katharina Janstova, Zofia Jennings, Paul Kisitu, Jaffar Kobolak, Julianna Kumar, Manoj Limonciel, Alice Lundqvist, Jessica Mihalik, Balázs Moritz, Wolfgang Pallocca, Giorgia Ulloa, Andrea Paola Cediel Pastor, Manuel Rovida, Costanza Sarkans, Ugis Schimming, Johannes P. Schmidt, Bela Z. Stöber, Regina Strassfeld, Tobias van de Water, Bob Wilmes, Anja van der Burg, Bart Verfaillie, Catherine M. von Hellfeld, Rebecca Vrieling, Harry Vrijenhoek, Nanette G. Leist, Marcel Arch Toxicol In Vitro Systems Hazard assessment, based on new approach methods (NAM), requires the use of batteries of assays, where individual tests may be contributed by different laboratories. A unified strategy for such collaborative testing is presented. It details all procedures required to allow test information to be usable for integrated hazard assessment, strategic project decisions and/or for regulatory purposes. The EU-ToxRisk project developed a strategy to provide regulatorily valid data, and exemplified this using a panel of > 20 assays (with > 50 individual endpoints), each exposed to 19 well-known test compounds (e.g. rotenone, colchicine, mercury, paracetamol, rifampicine, paraquat, taxol). Examples of strategy implementation are provided for all aspects required to ensure data validity: (i) documentation of test methods in a publicly accessible database; (ii) deposition of standard operating procedures (SOP) at the European Union DB-ALM repository; (iii) test readiness scoring accoding to defined criteria; (iv) disclosure of the pipeline for data processing; (v) link of uncertainty measures and metadata to the data; (vi) definition of test chemicals, their handling and their behavior in test media; (vii) specification of the test purpose and overall evaluation plans. Moreover, data generation was exemplified by providing results from 25 reporter assays. A complete evaluation of the entire test battery will be described elsewhere. A major learning from the retrospective analysis of this large testing project was the need for thorough definitions of the above strategy aspects, ideally in form of a study pre-registration, to allow adequate interpretation of the data and to ensure overall scientific/toxicological validity. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s00204-020-02802-6) contains supplementary material, which is available to authorized users. Springer Berlin Heidelberg 2020-07-06 2020 /pmc/articles/PMC7367925/ /pubmed/32632539 http://dx.doi.org/10.1007/s00204-020-02802-6 Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle In Vitro Systems
Krebs, Alice
van Vugt-Lussenburg, Barbara M. A.
Waldmann, Tanja
Albrecht, Wiebke
Boei, Jan
ter Braak, Bas
Brajnik, Maja
Braunbeck, Thomas
Brecklinghaus, Tim
Busquet, Francois
Dinnyes, Andras
Dokler, Joh
Dolde, Xenia
Exner, Thomas E.
Fisher, Ciarán
Fluri, David
Forsby, Anna
Hengstler, Jan G.
Holzer, Anna-Katharina
Janstova, Zofia
Jennings, Paul
Kisitu, Jaffar
Kobolak, Julianna
Kumar, Manoj
Limonciel, Alice
Lundqvist, Jessica
Mihalik, Balázs
Moritz, Wolfgang
Pallocca, Giorgia
Ulloa, Andrea Paola Cediel
Pastor, Manuel
Rovida, Costanza
Sarkans, Ugis
Schimming, Johannes P.
Schmidt, Bela Z.
Stöber, Regina
Strassfeld, Tobias
van de Water, Bob
Wilmes, Anja
van der Burg, Bart
Verfaillie, Catherine M.
von Hellfeld, Rebecca
Vrieling, Harry
Vrijenhoek, Nanette G.
Leist, Marcel
The EU-ToxRisk method documentation, data processing and chemical testing pipeline for the regulatory use of new approach methods
title The EU-ToxRisk method documentation, data processing and chemical testing pipeline for the regulatory use of new approach methods
title_full The EU-ToxRisk method documentation, data processing and chemical testing pipeline for the regulatory use of new approach methods
title_fullStr The EU-ToxRisk method documentation, data processing and chemical testing pipeline for the regulatory use of new approach methods
title_full_unstemmed The EU-ToxRisk method documentation, data processing and chemical testing pipeline for the regulatory use of new approach methods
title_short The EU-ToxRisk method documentation, data processing and chemical testing pipeline for the regulatory use of new approach methods
title_sort eu-toxrisk method documentation, data processing and chemical testing pipeline for the regulatory use of new approach methods
topic In Vitro Systems
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7367925/
https://www.ncbi.nlm.nih.gov/pubmed/32632539
http://dx.doi.org/10.1007/s00204-020-02802-6
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