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Next‐generation sequencing to investigate circular RNA profiles in the peripheral blood of preterm neonates with bronchopulmonary dysplasia
BACKGROUND: Circular RNAs (circRNAs) are emerging noncoding RNAs that are involved in many biological processes and diseases. The expression profile of circRNAs in preterm neonates with bronchopulmonary dysplasia (BPD) remains unresolved. METHODS: In BPD infants, peripheral venous blood was drawn an...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7370752/ https://www.ncbi.nlm.nih.gov/pubmed/32091150 http://dx.doi.org/10.1002/jcla.23260 |
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author | Mao, Xiaonan Guo, Yan Qiu, Jie Zhao, Li Xu, Junjie Yin, Jiao Lu, Keyu Zhang, Mingshun Cheng, Rui |
author_facet | Mao, Xiaonan Guo, Yan Qiu, Jie Zhao, Li Xu, Junjie Yin, Jiao Lu, Keyu Zhang, Mingshun Cheng, Rui |
author_sort | Mao, Xiaonan |
collection | PubMed |
description | BACKGROUND: Circular RNAs (circRNAs) are emerging noncoding RNAs that are involved in many biological processes and diseases. The expression profile of circRNAs in preterm neonates with bronchopulmonary dysplasia (BPD) remains unresolved. METHODS: In BPD infants, peripheral venous blood was drawn and circRNAs were extracted and sequenced by next‐generation sequencing. The levels of the selected circRNAs were measured by real‐time quantitative reverse transcription PCR. RESULTS: Among thousands of circRNAs, 491 circRNAs were significantly changed. Among the top 10 changed circRNAs, hsa_circ_0003122, hsa_circ_0003357, hsa_circ_0009983, hsa_circ_0003037, and hsa_circ_0009256 were significantly increased, while hsa_circ_0014932, hsa_circ_0015109, hsa_circ_0017811, hsa_circ_0020588, and hsa_circ_0015066 were significantly decreased. These altered circRNAs are involved in complicated biological functions and signaling pathways. Additionally, hsa_circ_0005577 (hsa_circ_FANCL), which was significantly increased in the moderate‐to‐severe BPD subjects, was correlated with oxygenation therapy. CONCLUSION: These results suggest that an aberrant circRNA profile in the peripheral blood of BPD infants might be important in BPD pathogenesis. |
format | Online Article Text |
id | pubmed-7370752 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-73707522020-07-21 Next‐generation sequencing to investigate circular RNA profiles in the peripheral blood of preterm neonates with bronchopulmonary dysplasia Mao, Xiaonan Guo, Yan Qiu, Jie Zhao, Li Xu, Junjie Yin, Jiao Lu, Keyu Zhang, Mingshun Cheng, Rui J Clin Lab Anal Research Articles BACKGROUND: Circular RNAs (circRNAs) are emerging noncoding RNAs that are involved in many biological processes and diseases. The expression profile of circRNAs in preterm neonates with bronchopulmonary dysplasia (BPD) remains unresolved. METHODS: In BPD infants, peripheral venous blood was drawn and circRNAs were extracted and sequenced by next‐generation sequencing. The levels of the selected circRNAs were measured by real‐time quantitative reverse transcription PCR. RESULTS: Among thousands of circRNAs, 491 circRNAs were significantly changed. Among the top 10 changed circRNAs, hsa_circ_0003122, hsa_circ_0003357, hsa_circ_0009983, hsa_circ_0003037, and hsa_circ_0009256 were significantly increased, while hsa_circ_0014932, hsa_circ_0015109, hsa_circ_0017811, hsa_circ_0020588, and hsa_circ_0015066 were significantly decreased. These altered circRNAs are involved in complicated biological functions and signaling pathways. Additionally, hsa_circ_0005577 (hsa_circ_FANCL), which was significantly increased in the moderate‐to‐severe BPD subjects, was correlated with oxygenation therapy. CONCLUSION: These results suggest that an aberrant circRNA profile in the peripheral blood of BPD infants might be important in BPD pathogenesis. John Wiley and Sons Inc. 2020-02-24 /pmc/articles/PMC7370752/ /pubmed/32091150 http://dx.doi.org/10.1002/jcla.23260 Text en © 2020 The Authors. Journal of Clinical Laboratory Analysis published by Wiley Periodicals, Inc This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes. |
spellingShingle | Research Articles Mao, Xiaonan Guo, Yan Qiu, Jie Zhao, Li Xu, Junjie Yin, Jiao Lu, Keyu Zhang, Mingshun Cheng, Rui Next‐generation sequencing to investigate circular RNA profiles in the peripheral blood of preterm neonates with bronchopulmonary dysplasia |
title | Next‐generation sequencing to investigate circular RNA profiles in the peripheral blood of preterm neonates with bronchopulmonary dysplasia |
title_full | Next‐generation sequencing to investigate circular RNA profiles in the peripheral blood of preterm neonates with bronchopulmonary dysplasia |
title_fullStr | Next‐generation sequencing to investigate circular RNA profiles in the peripheral blood of preterm neonates with bronchopulmonary dysplasia |
title_full_unstemmed | Next‐generation sequencing to investigate circular RNA profiles in the peripheral blood of preterm neonates with bronchopulmonary dysplasia |
title_short | Next‐generation sequencing to investigate circular RNA profiles in the peripheral blood of preterm neonates with bronchopulmonary dysplasia |
title_sort | next‐generation sequencing to investigate circular rna profiles in the peripheral blood of preterm neonates with bronchopulmonary dysplasia |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7370752/ https://www.ncbi.nlm.nih.gov/pubmed/32091150 http://dx.doi.org/10.1002/jcla.23260 |
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