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Next‐generation sequencing to investigate circular RNA profiles in the peripheral blood of preterm neonates with bronchopulmonary dysplasia

BACKGROUND: Circular RNAs (circRNAs) are emerging noncoding RNAs that are involved in many biological processes and diseases. The expression profile of circRNAs in preterm neonates with bronchopulmonary dysplasia (BPD) remains unresolved. METHODS: In BPD infants, peripheral venous blood was drawn an...

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Autores principales: Mao, Xiaonan, Guo, Yan, Qiu, Jie, Zhao, Li, Xu, Junjie, Yin, Jiao, Lu, Keyu, Zhang, Mingshun, Cheng, Rui
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7370752/
https://www.ncbi.nlm.nih.gov/pubmed/32091150
http://dx.doi.org/10.1002/jcla.23260
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author Mao, Xiaonan
Guo, Yan
Qiu, Jie
Zhao, Li
Xu, Junjie
Yin, Jiao
Lu, Keyu
Zhang, Mingshun
Cheng, Rui
author_facet Mao, Xiaonan
Guo, Yan
Qiu, Jie
Zhao, Li
Xu, Junjie
Yin, Jiao
Lu, Keyu
Zhang, Mingshun
Cheng, Rui
author_sort Mao, Xiaonan
collection PubMed
description BACKGROUND: Circular RNAs (circRNAs) are emerging noncoding RNAs that are involved in many biological processes and diseases. The expression profile of circRNAs in preterm neonates with bronchopulmonary dysplasia (BPD) remains unresolved. METHODS: In BPD infants, peripheral venous blood was drawn and circRNAs were extracted and sequenced by next‐generation sequencing. The levels of the selected circRNAs were measured by real‐time quantitative reverse transcription PCR. RESULTS: Among thousands of circRNAs, 491 circRNAs were significantly changed. Among the top 10 changed circRNAs, hsa_circ_0003122, hsa_circ_0003357, hsa_circ_0009983, hsa_circ_0003037, and hsa_circ_0009256 were significantly increased, while hsa_circ_0014932, hsa_circ_0015109, hsa_circ_0017811, hsa_circ_0020588, and hsa_circ_0015066 were significantly decreased. These altered circRNAs are involved in complicated biological functions and signaling pathways. Additionally, hsa_circ_0005577 (hsa_circ_FANCL), which was significantly increased in the moderate‐to‐severe BPD subjects, was correlated with oxygenation therapy. CONCLUSION: These results suggest that an aberrant circRNA profile in the peripheral blood of BPD infants might be important in BPD pathogenesis.
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spelling pubmed-73707522020-07-21 Next‐generation sequencing to investigate circular RNA profiles in the peripheral blood of preterm neonates with bronchopulmonary dysplasia Mao, Xiaonan Guo, Yan Qiu, Jie Zhao, Li Xu, Junjie Yin, Jiao Lu, Keyu Zhang, Mingshun Cheng, Rui J Clin Lab Anal Research Articles BACKGROUND: Circular RNAs (circRNAs) are emerging noncoding RNAs that are involved in many biological processes and diseases. The expression profile of circRNAs in preterm neonates with bronchopulmonary dysplasia (BPD) remains unresolved. METHODS: In BPD infants, peripheral venous blood was drawn and circRNAs were extracted and sequenced by next‐generation sequencing. The levels of the selected circRNAs were measured by real‐time quantitative reverse transcription PCR. RESULTS: Among thousands of circRNAs, 491 circRNAs were significantly changed. Among the top 10 changed circRNAs, hsa_circ_0003122, hsa_circ_0003357, hsa_circ_0009983, hsa_circ_0003037, and hsa_circ_0009256 were significantly increased, while hsa_circ_0014932, hsa_circ_0015109, hsa_circ_0017811, hsa_circ_0020588, and hsa_circ_0015066 were significantly decreased. These altered circRNAs are involved in complicated biological functions and signaling pathways. Additionally, hsa_circ_0005577 (hsa_circ_FANCL), which was significantly increased in the moderate‐to‐severe BPD subjects, was correlated with oxygenation therapy. CONCLUSION: These results suggest that an aberrant circRNA profile in the peripheral blood of BPD infants might be important in BPD pathogenesis. John Wiley and Sons Inc. 2020-02-24 /pmc/articles/PMC7370752/ /pubmed/32091150 http://dx.doi.org/10.1002/jcla.23260 Text en © 2020 The Authors. Journal of Clinical Laboratory Analysis published by Wiley Periodicals, Inc This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Research Articles
Mao, Xiaonan
Guo, Yan
Qiu, Jie
Zhao, Li
Xu, Junjie
Yin, Jiao
Lu, Keyu
Zhang, Mingshun
Cheng, Rui
Next‐generation sequencing to investigate circular RNA profiles in the peripheral blood of preterm neonates with bronchopulmonary dysplasia
title Next‐generation sequencing to investigate circular RNA profiles in the peripheral blood of preterm neonates with bronchopulmonary dysplasia
title_full Next‐generation sequencing to investigate circular RNA profiles in the peripheral blood of preterm neonates with bronchopulmonary dysplasia
title_fullStr Next‐generation sequencing to investigate circular RNA profiles in the peripheral blood of preterm neonates with bronchopulmonary dysplasia
title_full_unstemmed Next‐generation sequencing to investigate circular RNA profiles in the peripheral blood of preterm neonates with bronchopulmonary dysplasia
title_short Next‐generation sequencing to investigate circular RNA profiles in the peripheral blood of preterm neonates with bronchopulmonary dysplasia
title_sort next‐generation sequencing to investigate circular rna profiles in the peripheral blood of preterm neonates with bronchopulmonary dysplasia
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7370752/
https://www.ncbi.nlm.nih.gov/pubmed/32091150
http://dx.doi.org/10.1002/jcla.23260
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