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Genome-wide functional association networks: background, data & state-of-the-art resources

The vast amount of experimental data from recent advances in the field of high-throughput biology begs for integration into more complex data structures such as genome-wide functional association networks. Such networks have been used for elucidation of the interplay of intra-cellular molecules to m...

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Detalles Bibliográficos
Autores principales: Guala, Dimitri, Ogris, Christoph, Müller, Nikola, Sonnhammer, Erik L L
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7373183/
https://www.ncbi.nlm.nih.gov/pubmed/31281921
http://dx.doi.org/10.1093/bib/bbz064
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author Guala, Dimitri
Ogris, Christoph
Müller, Nikola
Sonnhammer, Erik L L
author_facet Guala, Dimitri
Ogris, Christoph
Müller, Nikola
Sonnhammer, Erik L L
author_sort Guala, Dimitri
collection PubMed
description The vast amount of experimental data from recent advances in the field of high-throughput biology begs for integration into more complex data structures such as genome-wide functional association networks. Such networks have been used for elucidation of the interplay of intra-cellular molecules to make advances ranging from the basic science understanding of evolutionary processes to the more translational field of precision medicine. The allure of the field has resulted in rapid growth of the number of available network resources, each with unique attributes exploitable to answer different biological questions. Unfortunately, the high volume of network resources makes it impossible for the intended user to select an appropriate tool for their particular research question. The aim of this paper is to provide an overview of the underlying data and representative network resources as well as to mention methods of integration, allowing a customized approach to resource selection. Additionally, this report will provide a primer for researchers venturing into the field of network integration.
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spelling pubmed-73731832020-07-23 Genome-wide functional association networks: background, data & state-of-the-art resources Guala, Dimitri Ogris, Christoph Müller, Nikola Sonnhammer, Erik L L Brief Bioinform Review Article The vast amount of experimental data from recent advances in the field of high-throughput biology begs for integration into more complex data structures such as genome-wide functional association networks. Such networks have been used for elucidation of the interplay of intra-cellular molecules to make advances ranging from the basic science understanding of evolutionary processes to the more translational field of precision medicine. The allure of the field has resulted in rapid growth of the number of available network resources, each with unique attributes exploitable to answer different biological questions. Unfortunately, the high volume of network resources makes it impossible for the intended user to select an appropriate tool for their particular research question. The aim of this paper is to provide an overview of the underlying data and representative network resources as well as to mention methods of integration, allowing a customized approach to resource selection. Additionally, this report will provide a primer for researchers venturing into the field of network integration. Oxford University Press 2019-07-05 /pmc/articles/PMC7373183/ /pubmed/31281921 http://dx.doi.org/10.1093/bib/bbz064 Text en © The Author(s) 2019. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Review Article
Guala, Dimitri
Ogris, Christoph
Müller, Nikola
Sonnhammer, Erik L L
Genome-wide functional association networks: background, data & state-of-the-art resources
title Genome-wide functional association networks: background, data & state-of-the-art resources
title_full Genome-wide functional association networks: background, data & state-of-the-art resources
title_fullStr Genome-wide functional association networks: background, data & state-of-the-art resources
title_full_unstemmed Genome-wide functional association networks: background, data & state-of-the-art resources
title_short Genome-wide functional association networks: background, data & state-of-the-art resources
title_sort genome-wide functional association networks: background, data & state-of-the-art resources
topic Review Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7373183/
https://www.ncbi.nlm.nih.gov/pubmed/31281921
http://dx.doi.org/10.1093/bib/bbz064
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