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Genome-wide functional association networks: background, data & state-of-the-art resources
The vast amount of experimental data from recent advances in the field of high-throughput biology begs for integration into more complex data structures such as genome-wide functional association networks. Such networks have been used for elucidation of the interplay of intra-cellular molecules to m...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7373183/ https://www.ncbi.nlm.nih.gov/pubmed/31281921 http://dx.doi.org/10.1093/bib/bbz064 |
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author | Guala, Dimitri Ogris, Christoph Müller, Nikola Sonnhammer, Erik L L |
author_facet | Guala, Dimitri Ogris, Christoph Müller, Nikola Sonnhammer, Erik L L |
author_sort | Guala, Dimitri |
collection | PubMed |
description | The vast amount of experimental data from recent advances in the field of high-throughput biology begs for integration into more complex data structures such as genome-wide functional association networks. Such networks have been used for elucidation of the interplay of intra-cellular molecules to make advances ranging from the basic science understanding of evolutionary processes to the more translational field of precision medicine. The allure of the field has resulted in rapid growth of the number of available network resources, each with unique attributes exploitable to answer different biological questions. Unfortunately, the high volume of network resources makes it impossible for the intended user to select an appropriate tool for their particular research question. The aim of this paper is to provide an overview of the underlying data and representative network resources as well as to mention methods of integration, allowing a customized approach to resource selection. Additionally, this report will provide a primer for researchers venturing into the field of network integration. |
format | Online Article Text |
id | pubmed-7373183 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-73731832020-07-23 Genome-wide functional association networks: background, data & state-of-the-art resources Guala, Dimitri Ogris, Christoph Müller, Nikola Sonnhammer, Erik L L Brief Bioinform Review Article The vast amount of experimental data from recent advances in the field of high-throughput biology begs for integration into more complex data structures such as genome-wide functional association networks. Such networks have been used for elucidation of the interplay of intra-cellular molecules to make advances ranging from the basic science understanding of evolutionary processes to the more translational field of precision medicine. The allure of the field has resulted in rapid growth of the number of available network resources, each with unique attributes exploitable to answer different biological questions. Unfortunately, the high volume of network resources makes it impossible for the intended user to select an appropriate tool for their particular research question. The aim of this paper is to provide an overview of the underlying data and representative network resources as well as to mention methods of integration, allowing a customized approach to resource selection. Additionally, this report will provide a primer for researchers venturing into the field of network integration. Oxford University Press 2019-07-05 /pmc/articles/PMC7373183/ /pubmed/31281921 http://dx.doi.org/10.1093/bib/bbz064 Text en © The Author(s) 2019. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Review Article Guala, Dimitri Ogris, Christoph Müller, Nikola Sonnhammer, Erik L L Genome-wide functional association networks: background, data & state-of-the-art resources |
title | Genome-wide functional association networks: background, data & state-of-the-art resources |
title_full | Genome-wide functional association networks: background, data & state-of-the-art resources |
title_fullStr | Genome-wide functional association networks: background, data & state-of-the-art resources |
title_full_unstemmed | Genome-wide functional association networks: background, data & state-of-the-art resources |
title_short | Genome-wide functional association networks: background, data & state-of-the-art resources |
title_sort | genome-wide functional association networks: background, data & state-of-the-art resources |
topic | Review Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7373183/ https://www.ncbi.nlm.nih.gov/pubmed/31281921 http://dx.doi.org/10.1093/bib/bbz064 |
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