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Quantum chemical calculations for over 200,000 organic radical species and 40,000 associated closed-shell molecules
The stabilities of radicals play a central role in determining the thermodynamics and kinetics of many reactions in organic chemistry. In this data descriptor, we provide consistent and validated quantum chemical calculations for over 200,000 organic radical species and 40,000 associated closed-shel...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7374734/ https://www.ncbi.nlm.nih.gov/pubmed/32694541 http://dx.doi.org/10.1038/s41597-020-00588-x |
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author | St. John, Peter C. Guan, Yanfei Kim, Yeonjoon Etz, Brian D. Kim, Seonah Paton, Robert S. |
author_facet | St. John, Peter C. Guan, Yanfei Kim, Yeonjoon Etz, Brian D. Kim, Seonah Paton, Robert S. |
author_sort | St. John, Peter C. |
collection | PubMed |
description | The stabilities of radicals play a central role in determining the thermodynamics and kinetics of many reactions in organic chemistry. In this data descriptor, we provide consistent and validated quantum chemical calculations for over 200,000 organic radical species and 40,000 associated closed-shell molecules containing C, H, N and O atoms. These data consist of optimized 3D geometries, enthalpies, Gibbs free energy, vibrational frequencies, Mulliken charges and spin densities calculated at the M06-2X/def2-TZVP level of theory, which was previously found to have a favorable trade-off between experimental accuracy and computational efficiency. We expect this data to be useful in the further development of machine learning techniques to predict reaction pathways, bond strengths, and other phenomena closely related to organic radical chemistry. |
format | Online Article Text |
id | pubmed-7374734 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-73747342020-07-24 Quantum chemical calculations for over 200,000 organic radical species and 40,000 associated closed-shell molecules St. John, Peter C. Guan, Yanfei Kim, Yeonjoon Etz, Brian D. Kim, Seonah Paton, Robert S. Sci Data Data Descriptor The stabilities of radicals play a central role in determining the thermodynamics and kinetics of many reactions in organic chemistry. In this data descriptor, we provide consistent and validated quantum chemical calculations for over 200,000 organic radical species and 40,000 associated closed-shell molecules containing C, H, N and O atoms. These data consist of optimized 3D geometries, enthalpies, Gibbs free energy, vibrational frequencies, Mulliken charges and spin densities calculated at the M06-2X/def2-TZVP level of theory, which was previously found to have a favorable trade-off between experimental accuracy and computational efficiency. We expect this data to be useful in the further development of machine learning techniques to predict reaction pathways, bond strengths, and other phenomena closely related to organic radical chemistry. Nature Publishing Group UK 2020-07-21 /pmc/articles/PMC7374734/ /pubmed/32694541 http://dx.doi.org/10.1038/s41597-020-00588-x Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ applies to the metadata files associated with this article. |
spellingShingle | Data Descriptor St. John, Peter C. Guan, Yanfei Kim, Yeonjoon Etz, Brian D. Kim, Seonah Paton, Robert S. Quantum chemical calculations for over 200,000 organic radical species and 40,000 associated closed-shell molecules |
title | Quantum chemical calculations for over 200,000 organic radical species and 40,000 associated closed-shell molecules |
title_full | Quantum chemical calculations for over 200,000 organic radical species and 40,000 associated closed-shell molecules |
title_fullStr | Quantum chemical calculations for over 200,000 organic radical species and 40,000 associated closed-shell molecules |
title_full_unstemmed | Quantum chemical calculations for over 200,000 organic radical species and 40,000 associated closed-shell molecules |
title_short | Quantum chemical calculations for over 200,000 organic radical species and 40,000 associated closed-shell molecules |
title_sort | quantum chemical calculations for over 200,000 organic radical species and 40,000 associated closed-shell molecules |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7374734/ https://www.ncbi.nlm.nih.gov/pubmed/32694541 http://dx.doi.org/10.1038/s41597-020-00588-x |
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