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Clustering a Chemical Inventory for Safety Assessment of Fragrance Ingredients: Identifying Read-Across Analogs to Address Data Gaps
[Image: see text] A valuable approach to chemical safety assessment is the use of read-across chemicals to provide safety data to support the assessment of structurally similar chemicals. An inventory of over 6000 discrete organic chemicals used as fragrance materials in consumer products has been c...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical
Society
2020
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7374741/ https://www.ncbi.nlm.nih.gov/pubmed/32338872 http://dx.doi.org/10.1021/acs.chemrestox.9b00518 |
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author | Date, Mihir S. O’Brien, Devin Botelho, Danielle J. Schultz, Terry W. Liebler, Daniel C. Penning, Trevor M. Salvito, Daniel T. |
author_facet | Date, Mihir S. O’Brien, Devin Botelho, Danielle J. Schultz, Terry W. Liebler, Daniel C. Penning, Trevor M. Salvito, Daniel T. |
author_sort | Date, Mihir S. |
collection | PubMed |
description | [Image: see text] A valuable approach to chemical safety assessment is the use of read-across chemicals to provide safety data to support the assessment of structurally similar chemicals. An inventory of over 6000 discrete organic chemicals used as fragrance materials in consumer products has been clustered into chemical class-based groups for efficient search of read-across sources. We developed a robust, tiered system for chemical classification based on (1) organic functional group, (2) structural similarity and reactivity features of the hydrocarbon skeletons, (3) predicted or experimentally verified Phase I and Phase II metabolism, and (4) expert pruning to consider these variables in the context of specific toxicity end points. The systematic combination of these data yielded clusters, which may be visualized as a top-down hierarchical clustering tree. In this tree, chemical classes are formed at the highest level according to organic functional groups. Each subsequent subcluster stemming from classes in this hierarchy of the cluster is a chemical cluster defined by common organic functional groups and close similarity in the hydrocarbon skeleton. By examining the available experimental data for a toxicological endpoint within each cluster, users can better identify potential read-across chemicals to support safety assessments. |
format | Online Article Text |
id | pubmed-7374741 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | American Chemical
Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-73747412020-07-22 Clustering a Chemical Inventory for Safety Assessment of Fragrance Ingredients: Identifying Read-Across Analogs to Address Data Gaps Date, Mihir S. O’Brien, Devin Botelho, Danielle J. Schultz, Terry W. Liebler, Daniel C. Penning, Trevor M. Salvito, Daniel T. Chem Res Toxicol [Image: see text] A valuable approach to chemical safety assessment is the use of read-across chemicals to provide safety data to support the assessment of structurally similar chemicals. An inventory of over 6000 discrete organic chemicals used as fragrance materials in consumer products has been clustered into chemical class-based groups for efficient search of read-across sources. We developed a robust, tiered system for chemical classification based on (1) organic functional group, (2) structural similarity and reactivity features of the hydrocarbon skeletons, (3) predicted or experimentally verified Phase I and Phase II metabolism, and (4) expert pruning to consider these variables in the context of specific toxicity end points. The systematic combination of these data yielded clusters, which may be visualized as a top-down hierarchical clustering tree. In this tree, chemical classes are formed at the highest level according to organic functional groups. Each subsequent subcluster stemming from classes in this hierarchy of the cluster is a chemical cluster defined by common organic functional groups and close similarity in the hydrocarbon skeleton. By examining the available experimental data for a toxicological endpoint within each cluster, users can better identify potential read-across chemicals to support safety assessments. American Chemical Society 2020-04-27 2020-07-20 /pmc/articles/PMC7374741/ /pubmed/32338872 http://dx.doi.org/10.1021/acs.chemrestox.9b00518 Text en Copyright © 2020 American Chemical Society This is an open access article published under a Creative Commons Non-Commercial No Derivative Works (CC-BY-NC-ND) Attribution License (http://pubs.acs.org/page/policy/authorchoice_ccbyncnd_termsofuse.html) , which permits copying and redistribution of the article, and creation of adaptations, all for non-commercial purposes. |
spellingShingle | Date, Mihir S. O’Brien, Devin Botelho, Danielle J. Schultz, Terry W. Liebler, Daniel C. Penning, Trevor M. Salvito, Daniel T. Clustering a Chemical Inventory for Safety Assessment of Fragrance Ingredients: Identifying Read-Across Analogs to Address Data Gaps |
title | Clustering a
Chemical Inventory for Safety Assessment
of Fragrance Ingredients: Identifying Read-Across Analogs to Address
Data Gaps |
title_full | Clustering a
Chemical Inventory for Safety Assessment
of Fragrance Ingredients: Identifying Read-Across Analogs to Address
Data Gaps |
title_fullStr | Clustering a
Chemical Inventory for Safety Assessment
of Fragrance Ingredients: Identifying Read-Across Analogs to Address
Data Gaps |
title_full_unstemmed | Clustering a
Chemical Inventory for Safety Assessment
of Fragrance Ingredients: Identifying Read-Across Analogs to Address
Data Gaps |
title_short | Clustering a
Chemical Inventory for Safety Assessment
of Fragrance Ingredients: Identifying Read-Across Analogs to Address
Data Gaps |
title_sort | clustering a
chemical inventory for safety assessment
of fragrance ingredients: identifying read-across analogs to address
data gaps |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7374741/ https://www.ncbi.nlm.nih.gov/pubmed/32338872 http://dx.doi.org/10.1021/acs.chemrestox.9b00518 |
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