Cargando…

Clustering a Chemical Inventory for Safety Assessment of Fragrance Ingredients: Identifying Read-Across Analogs to Address Data Gaps

[Image: see text] A valuable approach to chemical safety assessment is the use of read-across chemicals to provide safety data to support the assessment of structurally similar chemicals. An inventory of over 6000 discrete organic chemicals used as fragrance materials in consumer products has been c...

Descripción completa

Detalles Bibliográficos
Autores principales: Date, Mihir S., O’Brien, Devin, Botelho, Danielle J., Schultz, Terry W., Liebler, Daniel C., Penning, Trevor M., Salvito, Daniel T.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2020
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7374741/
https://www.ncbi.nlm.nih.gov/pubmed/32338872
http://dx.doi.org/10.1021/acs.chemrestox.9b00518
_version_ 1783561754587955200
author Date, Mihir S.
O’Brien, Devin
Botelho, Danielle J.
Schultz, Terry W.
Liebler, Daniel C.
Penning, Trevor M.
Salvito, Daniel T.
author_facet Date, Mihir S.
O’Brien, Devin
Botelho, Danielle J.
Schultz, Terry W.
Liebler, Daniel C.
Penning, Trevor M.
Salvito, Daniel T.
author_sort Date, Mihir S.
collection PubMed
description [Image: see text] A valuable approach to chemical safety assessment is the use of read-across chemicals to provide safety data to support the assessment of structurally similar chemicals. An inventory of over 6000 discrete organic chemicals used as fragrance materials in consumer products has been clustered into chemical class-based groups for efficient search of read-across sources. We developed a robust, tiered system for chemical classification based on (1) organic functional group, (2) structural similarity and reactivity features of the hydrocarbon skeletons, (3) predicted or experimentally verified Phase I and Phase II metabolism, and (4) expert pruning to consider these variables in the context of specific toxicity end points. The systematic combination of these data yielded clusters, which may be visualized as a top-down hierarchical clustering tree. In this tree, chemical classes are formed at the highest level according to organic functional groups. Each subsequent subcluster stemming from classes in this hierarchy of the cluster is a chemical cluster defined by common organic functional groups and close similarity in the hydrocarbon skeleton. By examining the available experimental data for a toxicological endpoint within each cluster, users can better identify potential read-across chemicals to support safety assessments.
format Online
Article
Text
id pubmed-7374741
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher American Chemical Society
record_format MEDLINE/PubMed
spelling pubmed-73747412020-07-22 Clustering a Chemical Inventory for Safety Assessment of Fragrance Ingredients: Identifying Read-Across Analogs to Address Data Gaps Date, Mihir S. O’Brien, Devin Botelho, Danielle J. Schultz, Terry W. Liebler, Daniel C. Penning, Trevor M. Salvito, Daniel T. Chem Res Toxicol [Image: see text] A valuable approach to chemical safety assessment is the use of read-across chemicals to provide safety data to support the assessment of structurally similar chemicals. An inventory of over 6000 discrete organic chemicals used as fragrance materials in consumer products has been clustered into chemical class-based groups for efficient search of read-across sources. We developed a robust, tiered system for chemical classification based on (1) organic functional group, (2) structural similarity and reactivity features of the hydrocarbon skeletons, (3) predicted or experimentally verified Phase I and Phase II metabolism, and (4) expert pruning to consider these variables in the context of specific toxicity end points. The systematic combination of these data yielded clusters, which may be visualized as a top-down hierarchical clustering tree. In this tree, chemical classes are formed at the highest level according to organic functional groups. Each subsequent subcluster stemming from classes in this hierarchy of the cluster is a chemical cluster defined by common organic functional groups and close similarity in the hydrocarbon skeleton. By examining the available experimental data for a toxicological endpoint within each cluster, users can better identify potential read-across chemicals to support safety assessments. American Chemical Society 2020-04-27 2020-07-20 /pmc/articles/PMC7374741/ /pubmed/32338872 http://dx.doi.org/10.1021/acs.chemrestox.9b00518 Text en Copyright © 2020 American Chemical Society This is an open access article published under a Creative Commons Non-Commercial No Derivative Works (CC-BY-NC-ND) Attribution License (http://pubs.acs.org/page/policy/authorchoice_ccbyncnd_termsofuse.html) , which permits copying and redistribution of the article, and creation of adaptations, all for non-commercial purposes.
spellingShingle Date, Mihir S.
O’Brien, Devin
Botelho, Danielle J.
Schultz, Terry W.
Liebler, Daniel C.
Penning, Trevor M.
Salvito, Daniel T.
Clustering a Chemical Inventory for Safety Assessment of Fragrance Ingredients: Identifying Read-Across Analogs to Address Data Gaps
title Clustering a Chemical Inventory for Safety Assessment of Fragrance Ingredients: Identifying Read-Across Analogs to Address Data Gaps
title_full Clustering a Chemical Inventory for Safety Assessment of Fragrance Ingredients: Identifying Read-Across Analogs to Address Data Gaps
title_fullStr Clustering a Chemical Inventory for Safety Assessment of Fragrance Ingredients: Identifying Read-Across Analogs to Address Data Gaps
title_full_unstemmed Clustering a Chemical Inventory for Safety Assessment of Fragrance Ingredients: Identifying Read-Across Analogs to Address Data Gaps
title_short Clustering a Chemical Inventory for Safety Assessment of Fragrance Ingredients: Identifying Read-Across Analogs to Address Data Gaps
title_sort clustering a chemical inventory for safety assessment of fragrance ingredients: identifying read-across analogs to address data gaps
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7374741/
https://www.ncbi.nlm.nih.gov/pubmed/32338872
http://dx.doi.org/10.1021/acs.chemrestox.9b00518
work_keys_str_mv AT datemihirs clusteringachemicalinventoryforsafetyassessmentoffragranceingredientsidentifyingreadacrossanalogstoaddressdatagaps
AT obriendevin clusteringachemicalinventoryforsafetyassessmentoffragranceingredientsidentifyingreadacrossanalogstoaddressdatagaps
AT botelhodaniellej clusteringachemicalinventoryforsafetyassessmentoffragranceingredientsidentifyingreadacrossanalogstoaddressdatagaps
AT schultzterryw clusteringachemicalinventoryforsafetyassessmentoffragranceingredientsidentifyingreadacrossanalogstoaddressdatagaps
AT lieblerdanielc clusteringachemicalinventoryforsafetyassessmentoffragranceingredientsidentifyingreadacrossanalogstoaddressdatagaps
AT penningtrevorm clusteringachemicalinventoryforsafetyassessmentoffragranceingredientsidentifyingreadacrossanalogstoaddressdatagaps
AT salvitodanielt clusteringachemicalinventoryforsafetyassessmentoffragranceingredientsidentifyingreadacrossanalogstoaddressdatagaps