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An outbreak of acute respiratory infection at a training base in Beijing, China due to human adenovirus type B55
BACKGROUND: Twelve students experienced symptoms of acute respiratory infection (ARI) at a training base in Beijing from August 26 to August 30, 2015. We investigated the cause of this ARI outbreak. METHODS: In partnership with the local center for disease control, we collected a total of twelve pha...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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BioMed Central
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7376533/ https://www.ncbi.nlm.nih.gov/pubmed/32703176 http://dx.doi.org/10.1186/s12879-020-05258-2 |
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author | Lu, Guilan Peng, Xiaomin Li, Renqing Liu, Yimeng Wu, Zhanguo Wang, Xifeng Zhang, Daitao Zhao, Jiachen Sun, Ying Zhang, Li Yang, Peng Wang, Quanyi |
author_facet | Lu, Guilan Peng, Xiaomin Li, Renqing Liu, Yimeng Wu, Zhanguo Wang, Xifeng Zhang, Daitao Zhao, Jiachen Sun, Ying Zhang, Li Yang, Peng Wang, Quanyi |
author_sort | Lu, Guilan |
collection | PubMed |
description | BACKGROUND: Twelve students experienced symptoms of acute respiratory infection (ARI) at a training base in Beijing from August 26 to August 30, 2015. We investigated the cause of this ARI outbreak. METHODS: In partnership with the local center for disease control, we collected a total of twelve pharyngeal swab specimens as well as demographic information for the affected patients. We used multiplex real-time PCR to screen for sixteen common respiratory viruses in these samples. To isolate HAdV, we inoculated Hep-2 cells with the human adenovirus (HAdV)-positive samples and then carried out sequencing and phylogenetic analysis of the hexon, fiber, and penton genes of the isolated adenoviruses. In addition, we analyzed the entire genome of one strain isolated from the index case to identify single-nucleotide substitutions. RESULTS: We identified ten HAdV-positive students using multiplex real-time PCR. None of the students were co-infected with other viruses. We successfully isolated seven HAdV strains from the pharyngeal swab specimens. The coding sequences of the hexon, fiber, and penton genes of these seven HAdV strains were identical, suggesting that they represented seven strains from a single virus clone. One HAdV isolate obtained from the index case, BJDX-01-2015, was selected for whole genome analysis. From this isolate, we obtained a 34,774-nucleotide sequence. The genome of BJDX-01-2015 clustered with HAdV-B55 in phylogenetic analyses and had 99.97% identity with human adenovirus 55 isolate HAdV-B/CHN/BJ01/2011/55 (GenBank accession no. JX491639). CONCLUSIONS: We identified HAdV-B55 as the strain associated with the August 2015 ARI outbreak at a training base in Beijing. This was the first reported outbreak in Beijing due to HAdV-B55. Continuous surveillance of respiratory adenoviruses is urgently needed to understand the epidemiological and evolutionary features of HAdV-B55, and an epidemiological modeling approach may provide further insights into this emerging public health threat. Furthermore, the clinical laboratory data from this outbreak provides important reference for the clinical diagnosis and may ultimately aid in informing the development of strategies to control and prevent respiratory tract infections caused by HAdV-B55. |
format | Online Article Text |
id | pubmed-7376533 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-73765332020-07-23 An outbreak of acute respiratory infection at a training base in Beijing, China due to human adenovirus type B55 Lu, Guilan Peng, Xiaomin Li, Renqing Liu, Yimeng Wu, Zhanguo Wang, Xifeng Zhang, Daitao Zhao, Jiachen Sun, Ying Zhang, Li Yang, Peng Wang, Quanyi BMC Infect Dis Research Article BACKGROUND: Twelve students experienced symptoms of acute respiratory infection (ARI) at a training base in Beijing from August 26 to August 30, 2015. We investigated the cause of this ARI outbreak. METHODS: In partnership with the local center for disease control, we collected a total of twelve pharyngeal swab specimens as well as demographic information for the affected patients. We used multiplex real-time PCR to screen for sixteen common respiratory viruses in these samples. To isolate HAdV, we inoculated Hep-2 cells with the human adenovirus (HAdV)-positive samples and then carried out sequencing and phylogenetic analysis of the hexon, fiber, and penton genes of the isolated adenoviruses. In addition, we analyzed the entire genome of one strain isolated from the index case to identify single-nucleotide substitutions. RESULTS: We identified ten HAdV-positive students using multiplex real-time PCR. None of the students were co-infected with other viruses. We successfully isolated seven HAdV strains from the pharyngeal swab specimens. The coding sequences of the hexon, fiber, and penton genes of these seven HAdV strains were identical, suggesting that they represented seven strains from a single virus clone. One HAdV isolate obtained from the index case, BJDX-01-2015, was selected for whole genome analysis. From this isolate, we obtained a 34,774-nucleotide sequence. The genome of BJDX-01-2015 clustered with HAdV-B55 in phylogenetic analyses and had 99.97% identity with human adenovirus 55 isolate HAdV-B/CHN/BJ01/2011/55 (GenBank accession no. JX491639). CONCLUSIONS: We identified HAdV-B55 as the strain associated with the August 2015 ARI outbreak at a training base in Beijing. This was the first reported outbreak in Beijing due to HAdV-B55. Continuous surveillance of respiratory adenoviruses is urgently needed to understand the epidemiological and evolutionary features of HAdV-B55, and an epidemiological modeling approach may provide further insights into this emerging public health threat. Furthermore, the clinical laboratory data from this outbreak provides important reference for the clinical diagnosis and may ultimately aid in informing the development of strategies to control and prevent respiratory tract infections caused by HAdV-B55. BioMed Central 2020-07-23 /pmc/articles/PMC7376533/ /pubmed/32703176 http://dx.doi.org/10.1186/s12879-020-05258-2 Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Article Lu, Guilan Peng, Xiaomin Li, Renqing Liu, Yimeng Wu, Zhanguo Wang, Xifeng Zhang, Daitao Zhao, Jiachen Sun, Ying Zhang, Li Yang, Peng Wang, Quanyi An outbreak of acute respiratory infection at a training base in Beijing, China due to human adenovirus type B55 |
title | An outbreak of acute respiratory infection at a training base in Beijing, China due to human adenovirus type B55 |
title_full | An outbreak of acute respiratory infection at a training base in Beijing, China due to human adenovirus type B55 |
title_fullStr | An outbreak of acute respiratory infection at a training base in Beijing, China due to human adenovirus type B55 |
title_full_unstemmed | An outbreak of acute respiratory infection at a training base in Beijing, China due to human adenovirus type B55 |
title_short | An outbreak of acute respiratory infection at a training base in Beijing, China due to human adenovirus type B55 |
title_sort | outbreak of acute respiratory infection at a training base in beijing, china due to human adenovirus type b55 |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7376533/ https://www.ncbi.nlm.nih.gov/pubmed/32703176 http://dx.doi.org/10.1186/s12879-020-05258-2 |
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