Cargando…

Structure and Morphology of Indole Analogue Crystals

[Image: see text] Indole and six simple analogues were crystallized in different environments to study the crystal habit changes. All crystal structures were determined by X-ray diffraction experiments. Lattice energies based on DFT-D3 periodic calculations and framework analysis were used to define...

Descripción completa

Detalles Bibliográficos
Autores principales: Pisarek, Joanna, Malinska, Maura
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2020
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7376690/
https://www.ncbi.nlm.nih.gov/pubmed/32715199
http://dx.doi.org/10.1021/acsomega.0c01020
_version_ 1783562086826115072
author Pisarek, Joanna
Malinska, Maura
author_facet Pisarek, Joanna
Malinska, Maura
author_sort Pisarek, Joanna
collection PubMed
description [Image: see text] Indole and six simple analogues were crystallized in different environments to study the crystal habit changes. All crystal structures were determined by X-ray diffraction experiments. Lattice energies based on DFT-D3 periodic calculations and framework analysis were used to define the most important intermolecular interactions in the crystal structures: N–H···π (−28 kJ/mol), hydrogen bonds (−34 kJ/mol), π···π stacking interactions (−18 kJ/mol), and dipole–dipole (−18 kJ/mol). As morphology is an important feature in many industrial applications, such as photovoltaic cells, electronic devices, and drug discovery, we predicted the crystal morphology of selected crystals using the BFDH and AE models. Facet character depends on the orientation of the molecules at the surface and is therefore sensitive to the variation of crystallization conditions such as solvent, method, and temperature. All indole derivatives tend to form plate crystals with the largest {002} facet. We showed that the morphological importance of the {002} facet increases, whereas the {011} facet decreases with solvent polarity for 5-nitroindole and 4-cyanindole crystals, resulting in a change of crystal habit from needle to plate and from plate to prism, respectively.
format Online
Article
Text
id pubmed-7376690
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher American Chemical Society
record_format MEDLINE/PubMed
spelling pubmed-73766902020-07-24 Structure and Morphology of Indole Analogue Crystals Pisarek, Joanna Malinska, Maura ACS Omega [Image: see text] Indole and six simple analogues were crystallized in different environments to study the crystal habit changes. All crystal structures were determined by X-ray diffraction experiments. Lattice energies based on DFT-D3 periodic calculations and framework analysis were used to define the most important intermolecular interactions in the crystal structures: N–H···π (−28 kJ/mol), hydrogen bonds (−34 kJ/mol), π···π stacking interactions (−18 kJ/mol), and dipole–dipole (−18 kJ/mol). As morphology is an important feature in many industrial applications, such as photovoltaic cells, electronic devices, and drug discovery, we predicted the crystal morphology of selected crystals using the BFDH and AE models. Facet character depends on the orientation of the molecules at the surface and is therefore sensitive to the variation of crystallization conditions such as solvent, method, and temperature. All indole derivatives tend to form plate crystals with the largest {002} facet. We showed that the morphological importance of the {002} facet increases, whereas the {011} facet decreases with solvent polarity for 5-nitroindole and 4-cyanindole crystals, resulting in a change of crystal habit from needle to plate and from plate to prism, respectively. American Chemical Society 2020-07-07 /pmc/articles/PMC7376690/ /pubmed/32715199 http://dx.doi.org/10.1021/acsomega.0c01020 Text en Copyright © 2020 American Chemical Society This is an open access article published under an ACS AuthorChoice License (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) , which permits copying and redistribution of the article or any adaptations for non-commercial purposes.
spellingShingle Pisarek, Joanna
Malinska, Maura
Structure and Morphology of Indole Analogue Crystals
title Structure and Morphology of Indole Analogue Crystals
title_full Structure and Morphology of Indole Analogue Crystals
title_fullStr Structure and Morphology of Indole Analogue Crystals
title_full_unstemmed Structure and Morphology of Indole Analogue Crystals
title_short Structure and Morphology of Indole Analogue Crystals
title_sort structure and morphology of indole analogue crystals
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7376690/
https://www.ncbi.nlm.nih.gov/pubmed/32715199
http://dx.doi.org/10.1021/acsomega.0c01020
work_keys_str_mv AT pisarekjoanna structureandmorphologyofindoleanaloguecrystals
AT malinskamaura structureandmorphologyofindoleanaloguecrystals