A performant bridge between fixed-size and variable-size seeding

BACKGROUND: Seeding is usually the initial step of high-throughput sequence aligners. Two popular seeding strategies are fixed-size seeding (k-mers, minimizers) and variable-size seeding (MEMs, SMEMs, maximal spanning seeds). The former strategy supports fast seed computation, while the latter one b...

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Detalles Bibliográficos
Autores principales: Kutzner, Arne, Kim, Pok-Son, Schmidt, Markus
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2020
Materias:
Methodology Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7376731/
https://www.ncbi.nlm.nih.gov/pubmed/32703211
http://dx.doi.org/10.1186/s12859-020-03642-y

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7376731/
https://www.ncbi.nlm.nih.gov/pubmed/32703211
http://dx.doi.org/10.1186/s12859-020-03642-y

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