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A performant bridge between fixed-size and variable-size seeding
BACKGROUND: Seeding is usually the initial step of high-throughput sequence aligners. Two popular seeding strategies are fixed-size seeding (k-mers, minimizers) and variable-size seeding (MEMs, SMEMs, maximal spanning seeds). The former strategy supports fast seed computation, while the latter one b...
| Autores principales: | , , |
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| Formato: | Online Artículo Texto |
| Lenguaje: | English |
| Publicado: |
BioMed Central
2020
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| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7376731/ https://www.ncbi.nlm.nih.gov/pubmed/32703211 http://dx.doi.org/10.1186/s12859-020-03642-y |