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Microbial community dissimilarity for source tracking with application in forensic studies
Microbial source-tracking is a useful tool for trace evidence analysis in Forensics. Community-wide massively parallel sequencing profiles can bypass the need for satellite microbes or marker sets, which are unreliable when handling unstable samples. We propose a novel method utilizing Aitchison dis...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7377425/ https://www.ncbi.nlm.nih.gov/pubmed/32702000 http://dx.doi.org/10.1371/journal.pone.0236082 |
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author | Carter, Kyle M. Lu, Meng Luo, Qianwen Jiang, Hongmei An, Lingling |
author_facet | Carter, Kyle M. Lu, Meng Luo, Qianwen Jiang, Hongmei An, Lingling |
author_sort | Carter, Kyle M. |
collection | PubMed |
description | Microbial source-tracking is a useful tool for trace evidence analysis in Forensics. Community-wide massively parallel sequencing profiles can bypass the need for satellite microbes or marker sets, which are unreliable when handling unstable samples. We propose a novel method utilizing Aitchison distance to select important suspects/sources, and then integrate it with existing algorithms in source tracking to estimate the proportions of microbial sample coming from important suspects/sources. A series of comprehensive simulation studies show that the proposed method is capable of accurate selection and therefore improves the performance of current methods such as Bayesian SourceTracker and FEAST in the presence of noise microbial sources. |
format | Online Article Text |
id | pubmed-7377425 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-73774252020-07-27 Microbial community dissimilarity for source tracking with application in forensic studies Carter, Kyle M. Lu, Meng Luo, Qianwen Jiang, Hongmei An, Lingling PLoS One Research Article Microbial source-tracking is a useful tool for trace evidence analysis in Forensics. Community-wide massively parallel sequencing profiles can bypass the need for satellite microbes or marker sets, which are unreliable when handling unstable samples. We propose a novel method utilizing Aitchison distance to select important suspects/sources, and then integrate it with existing algorithms in source tracking to estimate the proportions of microbial sample coming from important suspects/sources. A series of comprehensive simulation studies show that the proposed method is capable of accurate selection and therefore improves the performance of current methods such as Bayesian SourceTracker and FEAST in the presence of noise microbial sources. Public Library of Science 2020-07-23 /pmc/articles/PMC7377425/ /pubmed/32702000 http://dx.doi.org/10.1371/journal.pone.0236082 Text en © 2020 Carter et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Carter, Kyle M. Lu, Meng Luo, Qianwen Jiang, Hongmei An, Lingling Microbial community dissimilarity for source tracking with application in forensic studies |
title | Microbial community dissimilarity for source tracking with application in forensic studies |
title_full | Microbial community dissimilarity for source tracking with application in forensic studies |
title_fullStr | Microbial community dissimilarity for source tracking with application in forensic studies |
title_full_unstemmed | Microbial community dissimilarity for source tracking with application in forensic studies |
title_short | Microbial community dissimilarity for source tracking with application in forensic studies |
title_sort | microbial community dissimilarity for source tracking with application in forensic studies |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7377425/ https://www.ncbi.nlm.nih.gov/pubmed/32702000 http://dx.doi.org/10.1371/journal.pone.0236082 |
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