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Microbial community dissimilarity for source tracking with application in forensic studies

Microbial source-tracking is a useful tool for trace evidence analysis in Forensics. Community-wide massively parallel sequencing profiles can bypass the need for satellite microbes or marker sets, which are unreliable when handling unstable samples. We propose a novel method utilizing Aitchison dis...

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Detalles Bibliográficos
Autores principales: Carter, Kyle M., Lu, Meng, Luo, Qianwen, Jiang, Hongmei, An, Lingling
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7377425/
https://www.ncbi.nlm.nih.gov/pubmed/32702000
http://dx.doi.org/10.1371/journal.pone.0236082
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author Carter, Kyle M.
Lu, Meng
Luo, Qianwen
Jiang, Hongmei
An, Lingling
author_facet Carter, Kyle M.
Lu, Meng
Luo, Qianwen
Jiang, Hongmei
An, Lingling
author_sort Carter, Kyle M.
collection PubMed
description Microbial source-tracking is a useful tool for trace evidence analysis in Forensics. Community-wide massively parallel sequencing profiles can bypass the need for satellite microbes or marker sets, which are unreliable when handling unstable samples. We propose a novel method utilizing Aitchison distance to select important suspects/sources, and then integrate it with existing algorithms in source tracking to estimate the proportions of microbial sample coming from important suspects/sources. A series of comprehensive simulation studies show that the proposed method is capable of accurate selection and therefore improves the performance of current methods such as Bayesian SourceTracker and FEAST in the presence of noise microbial sources.
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spelling pubmed-73774252020-07-27 Microbial community dissimilarity for source tracking with application in forensic studies Carter, Kyle M. Lu, Meng Luo, Qianwen Jiang, Hongmei An, Lingling PLoS One Research Article Microbial source-tracking is a useful tool for trace evidence analysis in Forensics. Community-wide massively parallel sequencing profiles can bypass the need for satellite microbes or marker sets, which are unreliable when handling unstable samples. We propose a novel method utilizing Aitchison distance to select important suspects/sources, and then integrate it with existing algorithms in source tracking to estimate the proportions of microbial sample coming from important suspects/sources. A series of comprehensive simulation studies show that the proposed method is capable of accurate selection and therefore improves the performance of current methods such as Bayesian SourceTracker and FEAST in the presence of noise microbial sources. Public Library of Science 2020-07-23 /pmc/articles/PMC7377425/ /pubmed/32702000 http://dx.doi.org/10.1371/journal.pone.0236082 Text en © 2020 Carter et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Carter, Kyle M.
Lu, Meng
Luo, Qianwen
Jiang, Hongmei
An, Lingling
Microbial community dissimilarity for source tracking with application in forensic studies
title Microbial community dissimilarity for source tracking with application in forensic studies
title_full Microbial community dissimilarity for source tracking with application in forensic studies
title_fullStr Microbial community dissimilarity for source tracking with application in forensic studies
title_full_unstemmed Microbial community dissimilarity for source tracking with application in forensic studies
title_short Microbial community dissimilarity for source tracking with application in forensic studies
title_sort microbial community dissimilarity for source tracking with application in forensic studies
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7377425/
https://www.ncbi.nlm.nih.gov/pubmed/32702000
http://dx.doi.org/10.1371/journal.pone.0236082
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