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Untargeted metabolomics for uncovering biological markers of human skeletal muscle ageing

Ageing compromises skeletal muscle mass and function through poorly defined molecular aetiology. Here we have used untargeted metabolomics using UHPLC-MS to profile muscle tissue from young (n=10, 25±4y), middle aged (n=18, 50±4y) and older (n=18, 70±3y) men and women (50:50). Random Forest was used...

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Autores principales: Wilkinson, Daniel J., Rodriguez-Blanco, Giovanny, Dunn, Warwick B., Phillips, Bethan E., Williams, John P., Greenhaff, Paul L., Smith, Kenneth, Gallagher, Iain J., Atherton, Philip J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Impact Journals 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7377844/
https://www.ncbi.nlm.nih.gov/pubmed/32580166
http://dx.doi.org/10.18632/aging.103513
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author Wilkinson, Daniel J.
Rodriguez-Blanco, Giovanny
Dunn, Warwick B.
Phillips, Bethan E.
Williams, John P.
Greenhaff, Paul L.
Smith, Kenneth
Gallagher, Iain J.
Atherton, Philip J.
author_facet Wilkinson, Daniel J.
Rodriguez-Blanco, Giovanny
Dunn, Warwick B.
Phillips, Bethan E.
Williams, John P.
Greenhaff, Paul L.
Smith, Kenneth
Gallagher, Iain J.
Atherton, Philip J.
author_sort Wilkinson, Daniel J.
collection PubMed
description Ageing compromises skeletal muscle mass and function through poorly defined molecular aetiology. Here we have used untargeted metabolomics using UHPLC-MS to profile muscle tissue from young (n=10, 25±4y), middle aged (n=18, 50±4y) and older (n=18, 70±3y) men and women (50:50). Random Forest was used to prioritise metabolite features most informative in stratifying older age, with potential biological context examined using the prize-collecting Steiner forest algorithm embedded in the PIUMet software, to identify metabolic pathways likely perturbed in ageing. This approach was able to filter a large dataset of several thousand metabolites down to subnetworks of age important metabolites. Identified networks included the common age-associated metabolites such as androgens, (poly)amines/amino acids and lipid metabolites, in addition to some potentially novel ageing related markers such as dihydrothymine and imidazolone-5-proprionic acid. The present study reveals that this approach is a potentially useful tool to identify processes underlying human tissue ageing, and could therefore be utilised in future studies to investigate the links between age predictive metabolites and common biomarkers linked to health and disease across age.
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spelling pubmed-73778442020-07-31 Untargeted metabolomics for uncovering biological markers of human skeletal muscle ageing Wilkinson, Daniel J. Rodriguez-Blanco, Giovanny Dunn, Warwick B. Phillips, Bethan E. Williams, John P. Greenhaff, Paul L. Smith, Kenneth Gallagher, Iain J. Atherton, Philip J. Aging (Albany NY) Research Paper Ageing compromises skeletal muscle mass and function through poorly defined molecular aetiology. Here we have used untargeted metabolomics using UHPLC-MS to profile muscle tissue from young (n=10, 25±4y), middle aged (n=18, 50±4y) and older (n=18, 70±3y) men and women (50:50). Random Forest was used to prioritise metabolite features most informative in stratifying older age, with potential biological context examined using the prize-collecting Steiner forest algorithm embedded in the PIUMet software, to identify metabolic pathways likely perturbed in ageing. This approach was able to filter a large dataset of several thousand metabolites down to subnetworks of age important metabolites. Identified networks included the common age-associated metabolites such as androgens, (poly)amines/amino acids and lipid metabolites, in addition to some potentially novel ageing related markers such as dihydrothymine and imidazolone-5-proprionic acid. The present study reveals that this approach is a potentially useful tool to identify processes underlying human tissue ageing, and could therefore be utilised in future studies to investigate the links between age predictive metabolites and common biomarkers linked to health and disease across age. Impact Journals 2020-06-24 /pmc/articles/PMC7377844/ /pubmed/32580166 http://dx.doi.org/10.18632/aging.103513 Text en Copyright © 2020 Wilkinson et al. http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Paper
Wilkinson, Daniel J.
Rodriguez-Blanco, Giovanny
Dunn, Warwick B.
Phillips, Bethan E.
Williams, John P.
Greenhaff, Paul L.
Smith, Kenneth
Gallagher, Iain J.
Atherton, Philip J.
Untargeted metabolomics for uncovering biological markers of human skeletal muscle ageing
title Untargeted metabolomics for uncovering biological markers of human skeletal muscle ageing
title_full Untargeted metabolomics for uncovering biological markers of human skeletal muscle ageing
title_fullStr Untargeted metabolomics for uncovering biological markers of human skeletal muscle ageing
title_full_unstemmed Untargeted metabolomics for uncovering biological markers of human skeletal muscle ageing
title_short Untargeted metabolomics for uncovering biological markers of human skeletal muscle ageing
title_sort untargeted metabolomics for uncovering biological markers of human skeletal muscle ageing
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7377844/
https://www.ncbi.nlm.nih.gov/pubmed/32580166
http://dx.doi.org/10.18632/aging.103513
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