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Untargeted metabolomics for uncovering biological markers of human skeletal muscle ageing
Ageing compromises skeletal muscle mass and function through poorly defined molecular aetiology. Here we have used untargeted metabolomics using UHPLC-MS to profile muscle tissue from young (n=10, 25±4y), middle aged (n=18, 50±4y) and older (n=18, 70±3y) men and women (50:50). Random Forest was used...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Impact Journals
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7377844/ https://www.ncbi.nlm.nih.gov/pubmed/32580166 http://dx.doi.org/10.18632/aging.103513 |
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author | Wilkinson, Daniel J. Rodriguez-Blanco, Giovanny Dunn, Warwick B. Phillips, Bethan E. Williams, John P. Greenhaff, Paul L. Smith, Kenneth Gallagher, Iain J. Atherton, Philip J. |
author_facet | Wilkinson, Daniel J. Rodriguez-Blanco, Giovanny Dunn, Warwick B. Phillips, Bethan E. Williams, John P. Greenhaff, Paul L. Smith, Kenneth Gallagher, Iain J. Atherton, Philip J. |
author_sort | Wilkinson, Daniel J. |
collection | PubMed |
description | Ageing compromises skeletal muscle mass and function through poorly defined molecular aetiology. Here we have used untargeted metabolomics using UHPLC-MS to profile muscle tissue from young (n=10, 25±4y), middle aged (n=18, 50±4y) and older (n=18, 70±3y) men and women (50:50). Random Forest was used to prioritise metabolite features most informative in stratifying older age, with potential biological context examined using the prize-collecting Steiner forest algorithm embedded in the PIUMet software, to identify metabolic pathways likely perturbed in ageing. This approach was able to filter a large dataset of several thousand metabolites down to subnetworks of age important metabolites. Identified networks included the common age-associated metabolites such as androgens, (poly)amines/amino acids and lipid metabolites, in addition to some potentially novel ageing related markers such as dihydrothymine and imidazolone-5-proprionic acid. The present study reveals that this approach is a potentially useful tool to identify processes underlying human tissue ageing, and could therefore be utilised in future studies to investigate the links between age predictive metabolites and common biomarkers linked to health and disease across age. |
format | Online Article Text |
id | pubmed-7377844 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Impact Journals |
record_format | MEDLINE/PubMed |
spelling | pubmed-73778442020-07-31 Untargeted metabolomics for uncovering biological markers of human skeletal muscle ageing Wilkinson, Daniel J. Rodriguez-Blanco, Giovanny Dunn, Warwick B. Phillips, Bethan E. Williams, John P. Greenhaff, Paul L. Smith, Kenneth Gallagher, Iain J. Atherton, Philip J. Aging (Albany NY) Research Paper Ageing compromises skeletal muscle mass and function through poorly defined molecular aetiology. Here we have used untargeted metabolomics using UHPLC-MS to profile muscle tissue from young (n=10, 25±4y), middle aged (n=18, 50±4y) and older (n=18, 70±3y) men and women (50:50). Random Forest was used to prioritise metabolite features most informative in stratifying older age, with potential biological context examined using the prize-collecting Steiner forest algorithm embedded in the PIUMet software, to identify metabolic pathways likely perturbed in ageing. This approach was able to filter a large dataset of several thousand metabolites down to subnetworks of age important metabolites. Identified networks included the common age-associated metabolites such as androgens, (poly)amines/amino acids and lipid metabolites, in addition to some potentially novel ageing related markers such as dihydrothymine and imidazolone-5-proprionic acid. The present study reveals that this approach is a potentially useful tool to identify processes underlying human tissue ageing, and could therefore be utilised in future studies to investigate the links between age predictive metabolites and common biomarkers linked to health and disease across age. Impact Journals 2020-06-24 /pmc/articles/PMC7377844/ /pubmed/32580166 http://dx.doi.org/10.18632/aging.103513 Text en Copyright © 2020 Wilkinson et al. http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Paper Wilkinson, Daniel J. Rodriguez-Blanco, Giovanny Dunn, Warwick B. Phillips, Bethan E. Williams, John P. Greenhaff, Paul L. Smith, Kenneth Gallagher, Iain J. Atherton, Philip J. Untargeted metabolomics for uncovering biological markers of human skeletal muscle ageing |
title | Untargeted metabolomics for uncovering biological markers of human skeletal muscle ageing |
title_full | Untargeted metabolomics for uncovering biological markers of human skeletal muscle ageing |
title_fullStr | Untargeted metabolomics for uncovering biological markers of human skeletal muscle ageing |
title_full_unstemmed | Untargeted metabolomics for uncovering biological markers of human skeletal muscle ageing |
title_short | Untargeted metabolomics for uncovering biological markers of human skeletal muscle ageing |
title_sort | untargeted metabolomics for uncovering biological markers of human skeletal muscle ageing |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7377844/ https://www.ncbi.nlm.nih.gov/pubmed/32580166 http://dx.doi.org/10.18632/aging.103513 |
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