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Exome sequencing identifies somatic mutations in novel driver genes in non-small cell lung cancer
Lung cancer is the leading cause of cancer death worldwide and accounts for more than one-third of all newly diagnosed cancer cases in China. Therefore, it is of great clinical significance to explore new driver gene mutations in non-small-cell lung cancer (NSCLC). Using an initial bioinformatic ana...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Impact Journals
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7377869/ https://www.ncbi.nlm.nih.gov/pubmed/32629428 http://dx.doi.org/10.18632/aging.103500 |
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author | Zhang, Manman Zhang, Lele Li, Yan Sun, Feng Fang, Ya Zhang, Ruijia Wu, Jin Zhou, Guanbiao Song, Huaidong Xue, Liqiong Han, Bing Zheng, Cuixia |
author_facet | Zhang, Manman Zhang, Lele Li, Yan Sun, Feng Fang, Ya Zhang, Ruijia Wu, Jin Zhou, Guanbiao Song, Huaidong Xue, Liqiong Han, Bing Zheng, Cuixia |
author_sort | Zhang, Manman |
collection | PubMed |
description | Lung cancer is the leading cause of cancer death worldwide and accounts for more than one-third of all newly diagnosed cancer cases in China. Therefore, it is of great clinical significance to explore new driver gene mutations in non-small-cell lung cancer (NSCLC). Using an initial bioinformatic analysis, we identified somatic gene mutations in 13 patients with NSCLC and confirmed these mutations by targeted sequencing in an extended validation group of 88 patients. Recurrent mutations were detected in UNC5D (7.9%), PREX1 (5.0%), HECW1 (4.0%), DACH1 (2.0%), and GPC5 (2.0%). A functional study was also performed in UNC5D mutants. Mutations in UNC5D promoted tumorigenesis by abolishing the tumor suppressor function of the encoded protein. Additionally, in ten patients with lung squamous cell carcinoma, we identified mutations in KEAP1/NFE2L2 that influenced the expression of target genes in vivo and in vitro. Overall, the results of our study expanded the known spectrum of driver mutations involved in the pathogenesis of NSCLC. |
format | Online Article Text |
id | pubmed-7377869 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Impact Journals |
record_format | MEDLINE/PubMed |
spelling | pubmed-73778692020-07-31 Exome sequencing identifies somatic mutations in novel driver genes in non-small cell lung cancer Zhang, Manman Zhang, Lele Li, Yan Sun, Feng Fang, Ya Zhang, Ruijia Wu, Jin Zhou, Guanbiao Song, Huaidong Xue, Liqiong Han, Bing Zheng, Cuixia Aging (Albany NY) Research Paper Lung cancer is the leading cause of cancer death worldwide and accounts for more than one-third of all newly diagnosed cancer cases in China. Therefore, it is of great clinical significance to explore new driver gene mutations in non-small-cell lung cancer (NSCLC). Using an initial bioinformatic analysis, we identified somatic gene mutations in 13 patients with NSCLC and confirmed these mutations by targeted sequencing in an extended validation group of 88 patients. Recurrent mutations were detected in UNC5D (7.9%), PREX1 (5.0%), HECW1 (4.0%), DACH1 (2.0%), and GPC5 (2.0%). A functional study was also performed in UNC5D mutants. Mutations in UNC5D promoted tumorigenesis by abolishing the tumor suppressor function of the encoded protein. Additionally, in ten patients with lung squamous cell carcinoma, we identified mutations in KEAP1/NFE2L2 that influenced the expression of target genes in vivo and in vitro. Overall, the results of our study expanded the known spectrum of driver mutations involved in the pathogenesis of NSCLC. Impact Journals 2020-07-06 /pmc/articles/PMC7377869/ /pubmed/32629428 http://dx.doi.org/10.18632/aging.103500 Text en Copyright © 2020 Zhang et al. http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Paper Zhang, Manman Zhang, Lele Li, Yan Sun, Feng Fang, Ya Zhang, Ruijia Wu, Jin Zhou, Guanbiao Song, Huaidong Xue, Liqiong Han, Bing Zheng, Cuixia Exome sequencing identifies somatic mutations in novel driver genes in non-small cell lung cancer |
title | Exome sequencing identifies somatic mutations in novel driver genes in non-small cell lung cancer |
title_full | Exome sequencing identifies somatic mutations in novel driver genes in non-small cell lung cancer |
title_fullStr | Exome sequencing identifies somatic mutations in novel driver genes in non-small cell lung cancer |
title_full_unstemmed | Exome sequencing identifies somatic mutations in novel driver genes in non-small cell lung cancer |
title_short | Exome sequencing identifies somatic mutations in novel driver genes in non-small cell lung cancer |
title_sort | exome sequencing identifies somatic mutations in novel driver genes in non-small cell lung cancer |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7377869/ https://www.ncbi.nlm.nih.gov/pubmed/32629428 http://dx.doi.org/10.18632/aging.103500 |
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