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A computational ecosystem to support eHealth Knowledge Discovery technologies in Spanish

The massive amount of biomedical information published online requires the development of automatic knowledge discovery technologies to effectively make use of this available content. To foster and support this, the research community creates linguistic resources, such as annotated corpora, and desi...

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Autores principales: Piad-Morffis, Alejandro, Gutiérrez, Yoan, Almeida-Cruz, Yudivian, Muñoz, Rafael
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7377985/
https://www.ncbi.nlm.nih.gov/pubmed/32712157
http://dx.doi.org/10.1016/j.jbi.2020.103517
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author Piad-Morffis, Alejandro
Gutiérrez, Yoan
Almeida-Cruz, Yudivian
Muñoz, Rafael
author_facet Piad-Morffis, Alejandro
Gutiérrez, Yoan
Almeida-Cruz, Yudivian
Muñoz, Rafael
author_sort Piad-Morffis, Alejandro
collection PubMed
description The massive amount of biomedical information published online requires the development of automatic knowledge discovery technologies to effectively make use of this available content. To foster and support this, the research community creates linguistic resources, such as annotated corpora, and designs shared evaluation campaigns and academic competitive challenges. This work describes an ecosystem that facilitates research and development in knowledge discovery in the biomedical domain, specifically in Spanish language. To this end, several resources are developed and shared with the research community, including a novel semantic annotation model, an annotated corpus of 1045 sentences, and computational resources to build and evaluate automatic knowledge discovery techniques. Furthermore, a research task is defined with objective evaluation criteria, and an online evaluation environment is setup and maintained, enabling researchers interested in this task to obtain immediate feedback and compare their results with the state-of-the-art. As a case study, we analyze the results of a competitive challenge based on these resources and provide guidelines for future research. The constructed ecosystem provides an effective learning and evaluation environment to encourage research in knowledge discovery in Spanish biomedical documents.
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spelling pubmed-73779852020-07-24 A computational ecosystem to support eHealth Knowledge Discovery technologies in Spanish Piad-Morffis, Alejandro Gutiérrez, Yoan Almeida-Cruz, Yudivian Muñoz, Rafael J Biomed Inform Original Research The massive amount of biomedical information published online requires the development of automatic knowledge discovery technologies to effectively make use of this available content. To foster and support this, the research community creates linguistic resources, such as annotated corpora, and designs shared evaluation campaigns and academic competitive challenges. This work describes an ecosystem that facilitates research and development in knowledge discovery in the biomedical domain, specifically in Spanish language. To this end, several resources are developed and shared with the research community, including a novel semantic annotation model, an annotated corpus of 1045 sentences, and computational resources to build and evaluate automatic knowledge discovery techniques. Furthermore, a research task is defined with objective evaluation criteria, and an online evaluation environment is setup and maintained, enabling researchers interested in this task to obtain immediate feedback and compare their results with the state-of-the-art. As a case study, we analyze the results of a competitive challenge based on these resources and provide guidelines for future research. The constructed ecosystem provides an effective learning and evaluation environment to encourage research in knowledge discovery in Spanish biomedical documents. Elsevier Inc. 2020-09 2020-07-24 /pmc/articles/PMC7377985/ /pubmed/32712157 http://dx.doi.org/10.1016/j.jbi.2020.103517 Text en © 2020 Elsevier Inc. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Original Research
Piad-Morffis, Alejandro
Gutiérrez, Yoan
Almeida-Cruz, Yudivian
Muñoz, Rafael
A computational ecosystem to support eHealth Knowledge Discovery technologies in Spanish
title A computational ecosystem to support eHealth Knowledge Discovery technologies in Spanish
title_full A computational ecosystem to support eHealth Knowledge Discovery technologies in Spanish
title_fullStr A computational ecosystem to support eHealth Knowledge Discovery technologies in Spanish
title_full_unstemmed A computational ecosystem to support eHealth Knowledge Discovery technologies in Spanish
title_short A computational ecosystem to support eHealth Knowledge Discovery technologies in Spanish
title_sort computational ecosystem to support ehealth knowledge discovery technologies in spanish
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7377985/
https://www.ncbi.nlm.nih.gov/pubmed/32712157
http://dx.doi.org/10.1016/j.jbi.2020.103517
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