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[Formula: see text] : deep learning-based radiomics for the time-to-event outcome prediction in lung cancer
Hand-crafted radiomics has been used for developing models in order to predict time-to-event clinical outcomes in patients with lung cancer. Hand-crafted features, however, are pre-defined and extracted without taking the desired target into account. Furthermore, accurate segmentation of the tumor i...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7378058/ https://www.ncbi.nlm.nih.gov/pubmed/32703973 http://dx.doi.org/10.1038/s41598-020-69106-8 |
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author | Afshar, Parnian Mohammadi, Arash Tyrrell, Pascal N. Cheung, Patrick Sigiuk, Ahmed Plataniotis, Konstantinos N. Nguyen, Elsie T. Oikonomou, Anastasia |
author_facet | Afshar, Parnian Mohammadi, Arash Tyrrell, Pascal N. Cheung, Patrick Sigiuk, Ahmed Plataniotis, Konstantinos N. Nguyen, Elsie T. Oikonomou, Anastasia |
author_sort | Afshar, Parnian |
collection | PubMed |
description | Hand-crafted radiomics has been used for developing models in order to predict time-to-event clinical outcomes in patients with lung cancer. Hand-crafted features, however, are pre-defined and extracted without taking the desired target into account. Furthermore, accurate segmentation of the tumor is required for development of a reliable predictive model, which may be objective and a time-consuming task. To address these drawbacks, we propose a deep learning-based radiomics model for the time-to-event outcome prediction, referred to as DRTOP that takes raw images as inputs, and calculates the image-based risk of death or recurrence, for each patient. Our experiments on an in-house dataset of 132 lung cancer patients show that the obtained image-based risks are significant predictors of the time-to-event outcomes. Computed Tomography (CT)-based features are predictors of the overall survival (OS), with the hazard ratio (HR) of 1.35, distant control (DC), with HR of 1.06, and local control (LC), with HR of 2.66. The Positron Emission Tomography (PET)-based features are predictors of OS and recurrence free survival (RFS), with hazard ratios of 1.67 and 1.18, respectively. The concordance indices of [Formula: see text] , [Formula: see text] , and [Formula: see text] for predicting the OS, DC, and RFS show that the deep learning-based radiomics model is as accurate or better in predicting predefined clinical outcomes compared to hand-crafted radiomics, with concordance indices of [Formula: see text] , [Formula: see text] , and [Formula: see text] , for predicting the OS, DC, and RFS, respectively. Deep learning-based radiomics has the potential to offer complimentary predictive information in the personalized management of lung cancer patients. |
format | Online Article Text |
id | pubmed-7378058 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-73780582020-07-24 [Formula: see text] : deep learning-based radiomics for the time-to-event outcome prediction in lung cancer Afshar, Parnian Mohammadi, Arash Tyrrell, Pascal N. Cheung, Patrick Sigiuk, Ahmed Plataniotis, Konstantinos N. Nguyen, Elsie T. Oikonomou, Anastasia Sci Rep Article Hand-crafted radiomics has been used for developing models in order to predict time-to-event clinical outcomes in patients with lung cancer. Hand-crafted features, however, are pre-defined and extracted without taking the desired target into account. Furthermore, accurate segmentation of the tumor is required for development of a reliable predictive model, which may be objective and a time-consuming task. To address these drawbacks, we propose a deep learning-based radiomics model for the time-to-event outcome prediction, referred to as DRTOP that takes raw images as inputs, and calculates the image-based risk of death or recurrence, for each patient. Our experiments on an in-house dataset of 132 lung cancer patients show that the obtained image-based risks are significant predictors of the time-to-event outcomes. Computed Tomography (CT)-based features are predictors of the overall survival (OS), with the hazard ratio (HR) of 1.35, distant control (DC), with HR of 1.06, and local control (LC), with HR of 2.66. The Positron Emission Tomography (PET)-based features are predictors of OS and recurrence free survival (RFS), with hazard ratios of 1.67 and 1.18, respectively. The concordance indices of [Formula: see text] , [Formula: see text] , and [Formula: see text] for predicting the OS, DC, and RFS show that the deep learning-based radiomics model is as accurate or better in predicting predefined clinical outcomes compared to hand-crafted radiomics, with concordance indices of [Formula: see text] , [Formula: see text] , and [Formula: see text] , for predicting the OS, DC, and RFS, respectively. Deep learning-based radiomics has the potential to offer complimentary predictive information in the personalized management of lung cancer patients. Nature Publishing Group UK 2020-07-23 /pmc/articles/PMC7378058/ /pubmed/32703973 http://dx.doi.org/10.1038/s41598-020-69106-8 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Afshar, Parnian Mohammadi, Arash Tyrrell, Pascal N. Cheung, Patrick Sigiuk, Ahmed Plataniotis, Konstantinos N. Nguyen, Elsie T. Oikonomou, Anastasia [Formula: see text] : deep learning-based radiomics for the time-to-event outcome prediction in lung cancer |
title | [Formula: see text] : deep learning-based radiomics for the time-to-event outcome prediction in lung cancer |
title_full | [Formula: see text] : deep learning-based radiomics for the time-to-event outcome prediction in lung cancer |
title_fullStr | [Formula: see text] : deep learning-based radiomics for the time-to-event outcome prediction in lung cancer |
title_full_unstemmed | [Formula: see text] : deep learning-based radiomics for the time-to-event outcome prediction in lung cancer |
title_short | [Formula: see text] : deep learning-based radiomics for the time-to-event outcome prediction in lung cancer |
title_sort | [formula: see text] : deep learning-based radiomics for the time-to-event outcome prediction in lung cancer |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7378058/ https://www.ncbi.nlm.nih.gov/pubmed/32703973 http://dx.doi.org/10.1038/s41598-020-69106-8 |
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