Cargando…

[Formula: see text] : deep learning-based radiomics for the time-to-event outcome prediction in lung cancer

Hand-crafted radiomics has been used for developing models in order to predict time-to-event clinical outcomes in patients with lung cancer. Hand-crafted features, however, are pre-defined and extracted without taking the desired target into account. Furthermore, accurate segmentation of the tumor i...

Descripción completa

Detalles Bibliográficos
Autores principales: Afshar, Parnian, Mohammadi, Arash, Tyrrell, Pascal N., Cheung, Patrick, Sigiuk, Ahmed, Plataniotis, Konstantinos N., Nguyen, Elsie T., Oikonomou, Anastasia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7378058/
https://www.ncbi.nlm.nih.gov/pubmed/32703973
http://dx.doi.org/10.1038/s41598-020-69106-8
_version_ 1783562334583652352
author Afshar, Parnian
Mohammadi, Arash
Tyrrell, Pascal N.
Cheung, Patrick
Sigiuk, Ahmed
Plataniotis, Konstantinos N.
Nguyen, Elsie T.
Oikonomou, Anastasia
author_facet Afshar, Parnian
Mohammadi, Arash
Tyrrell, Pascal N.
Cheung, Patrick
Sigiuk, Ahmed
Plataniotis, Konstantinos N.
Nguyen, Elsie T.
Oikonomou, Anastasia
author_sort Afshar, Parnian
collection PubMed
description Hand-crafted radiomics has been used for developing models in order to predict time-to-event clinical outcomes in patients with lung cancer. Hand-crafted features, however, are pre-defined and extracted without taking the desired target into account. Furthermore, accurate segmentation of the tumor is required for development of a reliable predictive model, which may be objective and a time-consuming task. To address these drawbacks, we propose a deep learning-based radiomics model for the time-to-event outcome prediction, referred to as DRTOP that takes raw images as inputs, and calculates the image-based risk of death or recurrence, for each patient. Our experiments on an in-house dataset of 132 lung cancer patients show that the obtained image-based risks are significant predictors of the time-to-event outcomes. Computed Tomography (CT)-based features are predictors of the overall survival (OS), with the hazard ratio (HR) of 1.35, distant control (DC), with HR of 1.06, and local control (LC), with HR of 2.66. The Positron Emission Tomography (PET)-based features are predictors of OS and recurrence free survival (RFS), with hazard ratios of 1.67 and 1.18, respectively. The concordance indices of [Formula: see text] , [Formula: see text] , and [Formula: see text] for predicting the OS, DC, and RFS show that the deep learning-based radiomics model is as accurate or better in predicting predefined clinical outcomes compared to hand-crafted radiomics, with concordance indices of [Formula: see text] , [Formula: see text] , and [Formula: see text] , for predicting the OS, DC, and RFS, respectively. Deep learning-based radiomics has the potential to offer complimentary predictive information in the personalized management of lung cancer patients.
format Online
Article
Text
id pubmed-7378058
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-73780582020-07-24 [Formula: see text] : deep learning-based radiomics for the time-to-event outcome prediction in lung cancer Afshar, Parnian Mohammadi, Arash Tyrrell, Pascal N. Cheung, Patrick Sigiuk, Ahmed Plataniotis, Konstantinos N. Nguyen, Elsie T. Oikonomou, Anastasia Sci Rep Article Hand-crafted radiomics has been used for developing models in order to predict time-to-event clinical outcomes in patients with lung cancer. Hand-crafted features, however, are pre-defined and extracted without taking the desired target into account. Furthermore, accurate segmentation of the tumor is required for development of a reliable predictive model, which may be objective and a time-consuming task. To address these drawbacks, we propose a deep learning-based radiomics model for the time-to-event outcome prediction, referred to as DRTOP that takes raw images as inputs, and calculates the image-based risk of death or recurrence, for each patient. Our experiments on an in-house dataset of 132 lung cancer patients show that the obtained image-based risks are significant predictors of the time-to-event outcomes. Computed Tomography (CT)-based features are predictors of the overall survival (OS), with the hazard ratio (HR) of 1.35, distant control (DC), with HR of 1.06, and local control (LC), with HR of 2.66. The Positron Emission Tomography (PET)-based features are predictors of OS and recurrence free survival (RFS), with hazard ratios of 1.67 and 1.18, respectively. The concordance indices of [Formula: see text] , [Formula: see text] , and [Formula: see text] for predicting the OS, DC, and RFS show that the deep learning-based radiomics model is as accurate or better in predicting predefined clinical outcomes compared to hand-crafted radiomics, with concordance indices of [Formula: see text] , [Formula: see text] , and [Formula: see text] , for predicting the OS, DC, and RFS, respectively. Deep learning-based radiomics has the potential to offer complimentary predictive information in the personalized management of lung cancer patients. Nature Publishing Group UK 2020-07-23 /pmc/articles/PMC7378058/ /pubmed/32703973 http://dx.doi.org/10.1038/s41598-020-69106-8 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Afshar, Parnian
Mohammadi, Arash
Tyrrell, Pascal N.
Cheung, Patrick
Sigiuk, Ahmed
Plataniotis, Konstantinos N.
Nguyen, Elsie T.
Oikonomou, Anastasia
[Formula: see text] : deep learning-based radiomics for the time-to-event outcome prediction in lung cancer
title [Formula: see text] : deep learning-based radiomics for the time-to-event outcome prediction in lung cancer
title_full [Formula: see text] : deep learning-based radiomics for the time-to-event outcome prediction in lung cancer
title_fullStr [Formula: see text] : deep learning-based radiomics for the time-to-event outcome prediction in lung cancer
title_full_unstemmed [Formula: see text] : deep learning-based radiomics for the time-to-event outcome prediction in lung cancer
title_short [Formula: see text] : deep learning-based radiomics for the time-to-event outcome prediction in lung cancer
title_sort [formula: see text] : deep learning-based radiomics for the time-to-event outcome prediction in lung cancer
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7378058/
https://www.ncbi.nlm.nih.gov/pubmed/32703973
http://dx.doi.org/10.1038/s41598-020-69106-8
work_keys_str_mv AT afsharparnian formulaseetextdeeplearningbasedradiomicsforthetimetoeventoutcomepredictioninlungcancer
AT mohammadiarash formulaseetextdeeplearningbasedradiomicsforthetimetoeventoutcomepredictioninlungcancer
AT tyrrellpascaln formulaseetextdeeplearningbasedradiomicsforthetimetoeventoutcomepredictioninlungcancer
AT cheungpatrick formulaseetextdeeplearningbasedradiomicsforthetimetoeventoutcomepredictioninlungcancer
AT sigiukahmed formulaseetextdeeplearningbasedradiomicsforthetimetoeventoutcomepredictioninlungcancer
AT plataniotiskonstantinosn formulaseetextdeeplearningbasedradiomicsforthetimetoeventoutcomepredictioninlungcancer
AT nguyenelsiet formulaseetextdeeplearningbasedradiomicsforthetimetoeventoutcomepredictioninlungcancer
AT oikonomouanastasia formulaseetextdeeplearningbasedradiomicsforthetimetoeventoutcomepredictioninlungcancer