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Construction of a ceRNA coregulatory network and screening of hub biomarkers for salt‐sensitive hypertension

Salt‐sensitive hypertension (SSH) is an independent risk factor for cardiovascular disease. The regulation of long non‐coding RNAs, mRNAs and competing endogenous RNAs (ceRNAs) in the pathogenesis of SSH is uncertain. An RNA microarray was performed to discover SSH‐associated differentially expresse...

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Autores principales: Zhang, Ling, Qi, Han, Liu, Zheng, Peng, Wen‐Juan, Cao, Han, Guo, Chun‐Yue, Sun, Yan‐Yan, Pao, Christine, Xiang, Yu‐Tao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7379024/
https://www.ncbi.nlm.nih.gov/pubmed/32410228
http://dx.doi.org/10.1111/jcmm.15285
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author Zhang, Ling
Qi, Han
Liu, Zheng
Peng, Wen‐Juan
Cao, Han
Guo, Chun‐Yue
Sun, Yan‐Yan
Pao, Christine
Xiang, Yu‐Tao
author_facet Zhang, Ling
Qi, Han
Liu, Zheng
Peng, Wen‐Juan
Cao, Han
Guo, Chun‐Yue
Sun, Yan‐Yan
Pao, Christine
Xiang, Yu‐Tao
author_sort Zhang, Ling
collection PubMed
description Salt‐sensitive hypertension (SSH) is an independent risk factor for cardiovascular disease. The regulation of long non‐coding RNAs, mRNAs and competing endogenous RNAs (ceRNAs) in the pathogenesis of SSH is uncertain. An RNA microarray was performed to discover SSH‐associated differentially expressed lncRNAs (DElncRNAs) and mRNAs (DEmRNAs), and 296 DElncRNAs and 44 DEmRNAs were identified, and 247 DElncRNAs and 44 DEmRNAs among these RNAs were included in the coexpression network. The coregulatory network included 23 ceRNA loops, and six hub RNAs (lnc‐ILK‐8:1, lnc‐OTX1‐7:1, lnc‐RCAN1‐6:1, GIMAP8, SUV420H1 and PIGV) were identified for further population validation. The ceRNA correlations among lnc‐OTX1‐7:1, hsa‐miR‐361‐5p and GIMAP8 were confirmed in SSH and SRH patients. A larger‐sample validation confirmed that GIMAP8, SUV420H1 and PIGV were differentially expressed between the SSH and SRH groups. In addition, SUV420H1 was included in the SSH screening model, and the area under the curve of the model was 0.720 (95% CI: 0.624‐0.816). Our study explored the transcriptome profiles of SSH and constructed a ceRNA network to help elucidate the mechanism of SSH. In addition, SUV420H1 was identified as a hub element that participates in SSH transcriptional regulation and as a potential biomarker for the early diagnosis of SSH.
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spelling pubmed-73790242020-07-27 Construction of a ceRNA coregulatory network and screening of hub biomarkers for salt‐sensitive hypertension Zhang, Ling Qi, Han Liu, Zheng Peng, Wen‐Juan Cao, Han Guo, Chun‐Yue Sun, Yan‐Yan Pao, Christine Xiang, Yu‐Tao J Cell Mol Med Original Articles Salt‐sensitive hypertension (SSH) is an independent risk factor for cardiovascular disease. The regulation of long non‐coding RNAs, mRNAs and competing endogenous RNAs (ceRNAs) in the pathogenesis of SSH is uncertain. An RNA microarray was performed to discover SSH‐associated differentially expressed lncRNAs (DElncRNAs) and mRNAs (DEmRNAs), and 296 DElncRNAs and 44 DEmRNAs were identified, and 247 DElncRNAs and 44 DEmRNAs among these RNAs were included in the coexpression network. The coregulatory network included 23 ceRNA loops, and six hub RNAs (lnc‐ILK‐8:1, lnc‐OTX1‐7:1, lnc‐RCAN1‐6:1, GIMAP8, SUV420H1 and PIGV) were identified for further population validation. The ceRNA correlations among lnc‐OTX1‐7:1, hsa‐miR‐361‐5p and GIMAP8 were confirmed in SSH and SRH patients. A larger‐sample validation confirmed that GIMAP8, SUV420H1 and PIGV were differentially expressed between the SSH and SRH groups. In addition, SUV420H1 was included in the SSH screening model, and the area under the curve of the model was 0.720 (95% CI: 0.624‐0.816). Our study explored the transcriptome profiles of SSH and constructed a ceRNA network to help elucidate the mechanism of SSH. In addition, SUV420H1 was identified as a hub element that participates in SSH transcriptional regulation and as a potential biomarker for the early diagnosis of SSH. John Wiley and Sons Inc. 2020-05-15 2020-07 /pmc/articles/PMC7379024/ /pubmed/32410228 http://dx.doi.org/10.1111/jcmm.15285 Text en © 2020 The Authors. Journal of Cellular and Molecular Medicine published by Foundation for Cellular and Molecular Medicine and John Wiley & Sons Ltd This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Articles
Zhang, Ling
Qi, Han
Liu, Zheng
Peng, Wen‐Juan
Cao, Han
Guo, Chun‐Yue
Sun, Yan‐Yan
Pao, Christine
Xiang, Yu‐Tao
Construction of a ceRNA coregulatory network and screening of hub biomarkers for salt‐sensitive hypertension
title Construction of a ceRNA coregulatory network and screening of hub biomarkers for salt‐sensitive hypertension
title_full Construction of a ceRNA coregulatory network and screening of hub biomarkers for salt‐sensitive hypertension
title_fullStr Construction of a ceRNA coregulatory network and screening of hub biomarkers for salt‐sensitive hypertension
title_full_unstemmed Construction of a ceRNA coregulatory network and screening of hub biomarkers for salt‐sensitive hypertension
title_short Construction of a ceRNA coregulatory network and screening of hub biomarkers for salt‐sensitive hypertension
title_sort construction of a cerna coregulatory network and screening of hub biomarkers for salt‐sensitive hypertension
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7379024/
https://www.ncbi.nlm.nih.gov/pubmed/32410228
http://dx.doi.org/10.1111/jcmm.15285
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