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Geographic mapping of Enterobacteriaceae with extended-spectrum β-lactamase (ESBL) phenotype in Pereira, Colombia

BACKGROUND: Antimicrobial resistance is an ecological and multicausal problem. Infections caused by extended-spectrum β-lactamase producing Enterobacteriaceae (ESBL-E) can be acquired and transmitted in the community. Data on community-associated ESBL-E infections/colonizations in Colombia are scarc...

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Autores principales: Arias Ramos, Deving, Hoyos Pulgarín, Julián Andrés, Moreno Gómez, Germán Alberto, Alzate, John Alexander, Olaya Gómez, Juan Camilo, Cortés Bonilla, Isabella, Vargas Mosquera, Camila
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7379364/
https://www.ncbi.nlm.nih.gov/pubmed/32703276
http://dx.doi.org/10.1186/s12879-020-05267-1
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author Arias Ramos, Deving
Hoyos Pulgarín, Julián Andrés
Moreno Gómez, Germán Alberto
Alzate, John Alexander
Olaya Gómez, Juan Camilo
Cortés Bonilla, Isabella
Vargas Mosquera, Camila
author_facet Arias Ramos, Deving
Hoyos Pulgarín, Julián Andrés
Moreno Gómez, Germán Alberto
Alzate, John Alexander
Olaya Gómez, Juan Camilo
Cortés Bonilla, Isabella
Vargas Mosquera, Camila
author_sort Arias Ramos, Deving
collection PubMed
description BACKGROUND: Antimicrobial resistance is an ecological and multicausal problem. Infections caused by extended-spectrum β-lactamase producing Enterobacteriaceae (ESBL-E) can be acquired and transmitted in the community. Data on community-associated ESBL-E infections/colonizations in Colombia are scarce. Georeferencing tools can be used to study the dynamics of antimicrobial resistance at the community level. METHODS: We conducted a study of geographic mapping using modern tools based on geographic information systems (GIS). Two study centers from the city of Pereira, Colombia were involved. The records of patients who had ESBL-producing Enterobacteriaceae were reviewed. Antimicrobial susceptibility testing and phenotypic detection of ESBL was done according to CLSI standards. RESULTS: A population of 415 patients with community-acquired infections/colonizations and 77 hospital discharges were obtained. Geographic distribution was established and heat maps were created. Several hotspots were evidenced in some geographical areas of the south-west and north-east of the city. Many of the affected areas were near tertiary hospitals, rivers, and poultry industry areas. CONCLUSIONS: There are foci of antimicrobial resistance at the community level. This was demonstrated in the case of antimicrobial resistance caused by ESBL in a city in Colombia. Causality with tertiary hospitals in the city, some rivers and the poultry industry is proposed as an explanation of the evidenced phenomenon. Geographic mapping tools are useful for monitoring antimicrobial resistance in the community.
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spelling pubmed-73793642020-08-04 Geographic mapping of Enterobacteriaceae with extended-spectrum β-lactamase (ESBL) phenotype in Pereira, Colombia Arias Ramos, Deving Hoyos Pulgarín, Julián Andrés Moreno Gómez, Germán Alberto Alzate, John Alexander Olaya Gómez, Juan Camilo Cortés Bonilla, Isabella Vargas Mosquera, Camila BMC Infect Dis Research Article BACKGROUND: Antimicrobial resistance is an ecological and multicausal problem. Infections caused by extended-spectrum β-lactamase producing Enterobacteriaceae (ESBL-E) can be acquired and transmitted in the community. Data on community-associated ESBL-E infections/colonizations in Colombia are scarce. Georeferencing tools can be used to study the dynamics of antimicrobial resistance at the community level. METHODS: We conducted a study of geographic mapping using modern tools based on geographic information systems (GIS). Two study centers from the city of Pereira, Colombia were involved. The records of patients who had ESBL-producing Enterobacteriaceae were reviewed. Antimicrobial susceptibility testing and phenotypic detection of ESBL was done according to CLSI standards. RESULTS: A population of 415 patients with community-acquired infections/colonizations and 77 hospital discharges were obtained. Geographic distribution was established and heat maps were created. Several hotspots were evidenced in some geographical areas of the south-west and north-east of the city. Many of the affected areas were near tertiary hospitals, rivers, and poultry industry areas. CONCLUSIONS: There are foci of antimicrobial resistance at the community level. This was demonstrated in the case of antimicrobial resistance caused by ESBL in a city in Colombia. Causality with tertiary hospitals in the city, some rivers and the poultry industry is proposed as an explanation of the evidenced phenomenon. Geographic mapping tools are useful for monitoring antimicrobial resistance in the community. BioMed Central 2020-07-23 /pmc/articles/PMC7379364/ /pubmed/32703276 http://dx.doi.org/10.1186/s12879-020-05267-1 Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research Article
Arias Ramos, Deving
Hoyos Pulgarín, Julián Andrés
Moreno Gómez, Germán Alberto
Alzate, John Alexander
Olaya Gómez, Juan Camilo
Cortés Bonilla, Isabella
Vargas Mosquera, Camila
Geographic mapping of Enterobacteriaceae with extended-spectrum β-lactamase (ESBL) phenotype in Pereira, Colombia
title Geographic mapping of Enterobacteriaceae with extended-spectrum β-lactamase (ESBL) phenotype in Pereira, Colombia
title_full Geographic mapping of Enterobacteriaceae with extended-spectrum β-lactamase (ESBL) phenotype in Pereira, Colombia
title_fullStr Geographic mapping of Enterobacteriaceae with extended-spectrum β-lactamase (ESBL) phenotype in Pereira, Colombia
title_full_unstemmed Geographic mapping of Enterobacteriaceae with extended-spectrum β-lactamase (ESBL) phenotype in Pereira, Colombia
title_short Geographic mapping of Enterobacteriaceae with extended-spectrum β-lactamase (ESBL) phenotype in Pereira, Colombia
title_sort geographic mapping of enterobacteriaceae with extended-spectrum β-lactamase (esbl) phenotype in pereira, colombia
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7379364/
https://www.ncbi.nlm.nih.gov/pubmed/32703276
http://dx.doi.org/10.1186/s12879-020-05267-1
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