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Applying deep learning to right whale photo identification

Photo identification is an important tool for estimating abundance and monitoring population trends over time. However, manually matching photographs to known individuals is time‐consuming. Motivated by recent developments in image recognition, we hosted a data science challenge on the crowdsourcing...

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Detalles Bibliográficos
Autores principales: Bogucki, Robert, Cygan, Marek, Khan, Christin Brangwynne, Klimek, Maciej, Milczek, Jan Kanty, Mucha, Marcin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7380036/
https://www.ncbi.nlm.nih.gov/pubmed/30259577
http://dx.doi.org/10.1111/cobi.13226
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author Bogucki, Robert
Cygan, Marek
Khan, Christin Brangwynne
Klimek, Maciej
Milczek, Jan Kanty
Mucha, Marcin
author_facet Bogucki, Robert
Cygan, Marek
Khan, Christin Brangwynne
Klimek, Maciej
Milczek, Jan Kanty
Mucha, Marcin
author_sort Bogucki, Robert
collection PubMed
description Photo identification is an important tool for estimating abundance and monitoring population trends over time. However, manually matching photographs to known individuals is time‐consuming. Motivated by recent developments in image recognition, we hosted a data science challenge on the crowdsourcing platform Kaggle to automate the identification of endangered North Atlantic right whales (Eubalaena glacialis). The winning solution automatically identified individual whales with 87% accuracy with a series of convolutional neural networks to identify the region of interest on an image, rotate, crop, and create standardized photographs of uniform size and orientation and then identify the correct individual whale from these passport‐like photographs. Recent advances in deep learning coupled with this fully automated workflow have yielded impressive results and have the potential to revolutionize traditional methods for the collection of data on the abundance and distribution of wild populations. Presenting these results to a broad audience should further bridge the gap between the data science and conservation science communities.
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spelling pubmed-73800362020-07-27 Applying deep learning to right whale photo identification Bogucki, Robert Cygan, Marek Khan, Christin Brangwynne Klimek, Maciej Milczek, Jan Kanty Mucha, Marcin Conserv Biol Conservation Methods Photo identification is an important tool for estimating abundance and monitoring population trends over time. However, manually matching photographs to known individuals is time‐consuming. Motivated by recent developments in image recognition, we hosted a data science challenge on the crowdsourcing platform Kaggle to automate the identification of endangered North Atlantic right whales (Eubalaena glacialis). The winning solution automatically identified individual whales with 87% accuracy with a series of convolutional neural networks to identify the region of interest on an image, rotate, crop, and create standardized photographs of uniform size and orientation and then identify the correct individual whale from these passport‐like photographs. Recent advances in deep learning coupled with this fully automated workflow have yielded impressive results and have the potential to revolutionize traditional methods for the collection of data on the abundance and distribution of wild populations. Presenting these results to a broad audience should further bridge the gap between the data science and conservation science communities. John Wiley and Sons Inc. 2018-11-28 2019-06 /pmc/articles/PMC7380036/ /pubmed/30259577 http://dx.doi.org/10.1111/cobi.13226 Text en © 2018 The Authors. Conservation Biology published by Wiley Periodicals, Inc. on behalf of Society for Conservation Biology. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Conservation Methods
Bogucki, Robert
Cygan, Marek
Khan, Christin Brangwynne
Klimek, Maciej
Milczek, Jan Kanty
Mucha, Marcin
Applying deep learning to right whale photo identification
title Applying deep learning to right whale photo identification
title_full Applying deep learning to right whale photo identification
title_fullStr Applying deep learning to right whale photo identification
title_full_unstemmed Applying deep learning to right whale photo identification
title_short Applying deep learning to right whale photo identification
title_sort applying deep learning to right whale photo identification
topic Conservation Methods
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7380036/
https://www.ncbi.nlm.nih.gov/pubmed/30259577
http://dx.doi.org/10.1111/cobi.13226
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