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Prediction of human fetal–maternal blood concentration ratio of chemicals
BACKGROUND: The measurement of human fetal-maternal blood concentration ratio (logFM) of chemicals is critical for the risk assessment of chemical-induced developmental toxicity. While a few in vitro and ex vivo experimental methods were developed for predicting logFM of chemicals, the obtained expe...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7380269/ https://www.ncbi.nlm.nih.gov/pubmed/32742813 http://dx.doi.org/10.7717/peerj.9562 |
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author | Wang, Chia-Chi Lin, Pinpin Chou, Che-Yu Wang, Shan-Shan Tung, Chun-Wei |
author_facet | Wang, Chia-Chi Lin, Pinpin Chou, Che-Yu Wang, Shan-Shan Tung, Chun-Wei |
author_sort | Wang, Chia-Chi |
collection | PubMed |
description | BACKGROUND: The measurement of human fetal-maternal blood concentration ratio (logFM) of chemicals is critical for the risk assessment of chemical-induced developmental toxicity. While a few in vitro and ex vivo experimental methods were developed for predicting logFM of chemicals, the obtained experimental results are not able to directly predict in vivo outcomes. METHODS: A total of 55 chemicals with logFM values representing in vivo fetal-maternal blood ratio were divided into training and test datasets. An interpretable linear regression model was developed along with feature selection methods. Cross-validation on training dataset and prediction on independent test dataset were conducted to validate the prediction model. RESULTS: This study presents the first valid quantitative structure-activity relationship model following the Organisation for Economic Co-operation and Development (OECD) guidelines based on multiple linear regression for predicting in vivo logFM values. The autocorrelation descriptor AATSC1c and information content descriptor ZMIC1 were identified as informative features for predicting logFM. After the adjustment of the applicability domain, the developed model performs well with correlation coefficients of 0.875, 0.850 and 0.847 for model fitting, leave-one-out cross-validation and independent test, respectively. The model is expected to be useful for assessing human transplacental exposure. |
format | Online Article Text |
id | pubmed-7380269 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-73802692020-07-31 Prediction of human fetal–maternal blood concentration ratio of chemicals Wang, Chia-Chi Lin, Pinpin Chou, Che-Yu Wang, Shan-Shan Tung, Chun-Wei PeerJ Bioinformatics BACKGROUND: The measurement of human fetal-maternal blood concentration ratio (logFM) of chemicals is critical for the risk assessment of chemical-induced developmental toxicity. While a few in vitro and ex vivo experimental methods were developed for predicting logFM of chemicals, the obtained experimental results are not able to directly predict in vivo outcomes. METHODS: A total of 55 chemicals with logFM values representing in vivo fetal-maternal blood ratio were divided into training and test datasets. An interpretable linear regression model was developed along with feature selection methods. Cross-validation on training dataset and prediction on independent test dataset were conducted to validate the prediction model. RESULTS: This study presents the first valid quantitative structure-activity relationship model following the Organisation for Economic Co-operation and Development (OECD) guidelines based on multiple linear regression for predicting in vivo logFM values. The autocorrelation descriptor AATSC1c and information content descriptor ZMIC1 were identified as informative features for predicting logFM. After the adjustment of the applicability domain, the developed model performs well with correlation coefficients of 0.875, 0.850 and 0.847 for model fitting, leave-one-out cross-validation and independent test, respectively. The model is expected to be useful for assessing human transplacental exposure. PeerJ Inc. 2020-07-21 /pmc/articles/PMC7380269/ /pubmed/32742813 http://dx.doi.org/10.7717/peerj.9562 Text en ©2020 Wang et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. |
spellingShingle | Bioinformatics Wang, Chia-Chi Lin, Pinpin Chou, Che-Yu Wang, Shan-Shan Tung, Chun-Wei Prediction of human fetal–maternal blood concentration ratio of chemicals |
title | Prediction of human fetal–maternal blood concentration ratio of chemicals |
title_full | Prediction of human fetal–maternal blood concentration ratio of chemicals |
title_fullStr | Prediction of human fetal–maternal blood concentration ratio of chemicals |
title_full_unstemmed | Prediction of human fetal–maternal blood concentration ratio of chemicals |
title_short | Prediction of human fetal–maternal blood concentration ratio of chemicals |
title_sort | prediction of human fetal–maternal blood concentration ratio of chemicals |
topic | Bioinformatics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7380269/ https://www.ncbi.nlm.nih.gov/pubmed/32742813 http://dx.doi.org/10.7717/peerj.9562 |
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