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Predicting the risk of asthma attacks in children, adolescents and adults: protocol for a machine learning algorithm derived from a primary care-based retrospective cohort

INTRODUCTION: Most asthma attacks and subsequent deaths are potentially preventable. We aim to develop a prognostic tool for identifying patients at high risk of asthma attacks in primary care by leveraging advances in machine learning. METHODS AND ANALYSIS: Current prognostic tools use logistic reg...

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Autores principales: Hussain, Zain, Shah, Syed Ahmar, Mukherjee, Mome, Sheikh, Aziz
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BMJ Publishing Group 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7380838/
https://www.ncbi.nlm.nih.gov/pubmed/32709646
http://dx.doi.org/10.1136/bmjopen-2019-036099
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author Hussain, Zain
Shah, Syed Ahmar
Mukherjee, Mome
Sheikh, Aziz
author_facet Hussain, Zain
Shah, Syed Ahmar
Mukherjee, Mome
Sheikh, Aziz
author_sort Hussain, Zain
collection PubMed
description INTRODUCTION: Most asthma attacks and subsequent deaths are potentially preventable. We aim to develop a prognostic tool for identifying patients at high risk of asthma attacks in primary care by leveraging advances in machine learning. METHODS AND ANALYSIS: Current prognostic tools use logistic regression to develop a risk scoring model for asthma attacks. We propose to build on this by systematically applying various well-known machine learning techniques to a large longitudinal deidentified primary care database, the Optimum Patient Care Research Database, and comparatively evaluate their performance with the existing logistic regression model and against each other. Machine learning algorithms vary in their predictive abilities based on the dataset and the approach to analysis employed. We will undertake feature selection, classification (both one-class and two-class classifiers) and performance evaluation. Patients who have had actively treated clinician-diagnosed asthma, aged 8–80 years and with 3 years of continuous data, from 2016 to 2018, will be selected. Risk factors will be obtained from the first year, while the next 2 years will form the outcome period, in which the primary endpoint will be the occurrence of an asthma attack. ETHICS AND DISSEMINATION: We have obtained approval from OPCRD’s Anonymous Data Ethics Protocols and Transparency (ADEPT) Committee. We will seek ethics approval from The University of Edinburgh’s Research Ethics Group (UREG). We aim to present our findings at scientific conferences and in peer-reviewed journals.
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spelling pubmed-73808382020-08-04 Predicting the risk of asthma attacks in children, adolescents and adults: protocol for a machine learning algorithm derived from a primary care-based retrospective cohort Hussain, Zain Shah, Syed Ahmar Mukherjee, Mome Sheikh, Aziz BMJ Open Respiratory Medicine INTRODUCTION: Most asthma attacks and subsequent deaths are potentially preventable. We aim to develop a prognostic tool for identifying patients at high risk of asthma attacks in primary care by leveraging advances in machine learning. METHODS AND ANALYSIS: Current prognostic tools use logistic regression to develop a risk scoring model for asthma attacks. We propose to build on this by systematically applying various well-known machine learning techniques to a large longitudinal deidentified primary care database, the Optimum Patient Care Research Database, and comparatively evaluate their performance with the existing logistic regression model and against each other. Machine learning algorithms vary in their predictive abilities based on the dataset and the approach to analysis employed. We will undertake feature selection, classification (both one-class and two-class classifiers) and performance evaluation. Patients who have had actively treated clinician-diagnosed asthma, aged 8–80 years and with 3 years of continuous data, from 2016 to 2018, will be selected. Risk factors will be obtained from the first year, while the next 2 years will form the outcome period, in which the primary endpoint will be the occurrence of an asthma attack. ETHICS AND DISSEMINATION: We have obtained approval from OPCRD’s Anonymous Data Ethics Protocols and Transparency (ADEPT) Committee. We will seek ethics approval from The University of Edinburgh’s Research Ethics Group (UREG). We aim to present our findings at scientific conferences and in peer-reviewed journals. BMJ Publishing Group 2020-07-23 /pmc/articles/PMC7380838/ /pubmed/32709646 http://dx.doi.org/10.1136/bmjopen-2019-036099 Text en © Author(s) (or their employer(s)) 2020. Re-use permitted under CC BY. Published by BMJ. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed in accordance with the Creative Commons Attribution 4.0 Unported (CC BY 4.0) license, which permits others to copy, redistribute, remix, transform and build upon this work for any purpose, provided the original work is properly cited, a link to the licence is given, and indication of whether changes were made. See: https://creativecommons.org/licenses/by/4.0/.
spellingShingle Respiratory Medicine
Hussain, Zain
Shah, Syed Ahmar
Mukherjee, Mome
Sheikh, Aziz
Predicting the risk of asthma attacks in children, adolescents and adults: protocol for a machine learning algorithm derived from a primary care-based retrospective cohort
title Predicting the risk of asthma attacks in children, adolescents and adults: protocol for a machine learning algorithm derived from a primary care-based retrospective cohort
title_full Predicting the risk of asthma attacks in children, adolescents and adults: protocol for a machine learning algorithm derived from a primary care-based retrospective cohort
title_fullStr Predicting the risk of asthma attacks in children, adolescents and adults: protocol for a machine learning algorithm derived from a primary care-based retrospective cohort
title_full_unstemmed Predicting the risk of asthma attacks in children, adolescents and adults: protocol for a machine learning algorithm derived from a primary care-based retrospective cohort
title_short Predicting the risk of asthma attacks in children, adolescents and adults: protocol for a machine learning algorithm derived from a primary care-based retrospective cohort
title_sort predicting the risk of asthma attacks in children, adolescents and adults: protocol for a machine learning algorithm derived from a primary care-based retrospective cohort
topic Respiratory Medicine
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7380838/
https://www.ncbi.nlm.nih.gov/pubmed/32709646
http://dx.doi.org/10.1136/bmjopen-2019-036099
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