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Hand Resting Tremor Assessment of Healthy and Patients With Parkinson’s Disease: An Exploratory Machine Learning Study
The aim of this study is comparing the accuracies of machine learning algorithms to classify data concerning healthy subjects and patients with Parkinson’s Disease (PD), toward different time window lengths and a number of features. Thirty-two healthy subjects and eighteen patients with PD took part...
Autores principales: | , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7381229/ https://www.ncbi.nlm.nih.gov/pubmed/32766223 http://dx.doi.org/10.3389/fbioe.2020.00778 |
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author | de Araújo, Ana Camila Alves Santos, Enzo Gabriel da Rocha de Sá, Karina Santos Guedes Furtado, Viviane Kharine Teixeira Santos, Felipe Augusto de Lima, Ramon Costa Krejcová, Lane Viana Santos-Lobato, Bruno Lopes Pinto, Gustavo Henrique Lima Cabral, André dos Santos Belgamo, Anderson Callegari, Bianca Kleiner, Ana Francisca Rozin Costa e Silva, Anselmo de Athayde Souza, Givago da Silva |
author_facet | de Araújo, Ana Camila Alves Santos, Enzo Gabriel da Rocha de Sá, Karina Santos Guedes Furtado, Viviane Kharine Teixeira Santos, Felipe Augusto de Lima, Ramon Costa Krejcová, Lane Viana Santos-Lobato, Bruno Lopes Pinto, Gustavo Henrique Lima Cabral, André dos Santos Belgamo, Anderson Callegari, Bianca Kleiner, Ana Francisca Rozin Costa e Silva, Anselmo de Athayde Souza, Givago da Silva |
author_sort | de Araújo, Ana Camila Alves |
collection | PubMed |
description | The aim of this study is comparing the accuracies of machine learning algorithms to classify data concerning healthy subjects and patients with Parkinson’s Disease (PD), toward different time window lengths and a number of features. Thirty-two healthy subjects and eighteen patients with PD took part on this study. The study obtained inertial recordings by using an accelerometer and a gyroscope assessing both hands of the subjects during hand resting state. We extracted time and temporal frequency domain features to feed seven machine learning algorithms: k-nearest-neighbors (kNN); logistic regression; support vector classifier (SVC); linear discriminant analysis; random forest; decision tree; and gaussian Naïve Bayes. The accuracy of the classifiers was compared using different numbers of extracted features (i.e., 272, 190, 136, 82, and 27) from different time window lengths (i.e., 1, 5, 10, and 15 s). The inertial recordings were characterized by oscillatory waveforms that, especially in patients with PD, peaked in a frequency range between 3 and 8 Hz. Outcomes showed that the most important features were the mean frequency, linear prediction coefficients, power ratio, power density skew, and kurtosis. We observed that accuracies calculated in the testing phase were higher than in the training phase. Comparing the testing accuracies, we found significant interactions among time window length and the type of classifier (p < 0.05). The study found significant effects on estimated accuracies, according to their type of algorithm, time window length, and their interaction. kNN presented the highest accuracy, while SVC showed the worst results. kNN feeding by features extracted from 1 and 5 s were the combination with more frequently highest accuracies. Classification using few features led to similar decision of the algorithms. Moreover, performance increased significantly according to the number of features used, reaching a plateau around 136. Finally, the results of this study suggested that kNN was the best algorithm to classify hand resting tremor in patients with PD. |
format | Online Article Text |
id | pubmed-7381229 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-73812292020-08-05 Hand Resting Tremor Assessment of Healthy and Patients With Parkinson’s Disease: An Exploratory Machine Learning Study de Araújo, Ana Camila Alves Santos, Enzo Gabriel da Rocha de Sá, Karina Santos Guedes Furtado, Viviane Kharine Teixeira Santos, Felipe Augusto de Lima, Ramon Costa Krejcová, Lane Viana Santos-Lobato, Bruno Lopes Pinto, Gustavo Henrique Lima Cabral, André dos Santos Belgamo, Anderson Callegari, Bianca Kleiner, Ana Francisca Rozin Costa e Silva, Anselmo de Athayde Souza, Givago da Silva Front Bioeng Biotechnol Bioengineering and Biotechnology The aim of this study is comparing the accuracies of machine learning algorithms to classify data concerning healthy subjects and patients with Parkinson’s Disease (PD), toward different time window lengths and a number of features. Thirty-two healthy subjects and eighteen patients with PD took part on this study. The study obtained inertial recordings by using an accelerometer and a gyroscope assessing both hands of the subjects during hand resting state. We extracted time and temporal frequency domain features to feed seven machine learning algorithms: k-nearest-neighbors (kNN); logistic regression; support vector classifier (SVC); linear discriminant analysis; random forest; decision tree; and gaussian Naïve Bayes. The accuracy of the classifiers was compared using different numbers of extracted features (i.e., 272, 190, 136, 82, and 27) from different time window lengths (i.e., 1, 5, 10, and 15 s). The inertial recordings were characterized by oscillatory waveforms that, especially in patients with PD, peaked in a frequency range between 3 and 8 Hz. Outcomes showed that the most important features were the mean frequency, linear prediction coefficients, power ratio, power density skew, and kurtosis. We observed that accuracies calculated in the testing phase were higher than in the training phase. Comparing the testing accuracies, we found significant interactions among time window length and the type of classifier (p < 0.05). The study found significant effects on estimated accuracies, according to their type of algorithm, time window length, and their interaction. kNN presented the highest accuracy, while SVC showed the worst results. kNN feeding by features extracted from 1 and 5 s were the combination with more frequently highest accuracies. Classification using few features led to similar decision of the algorithms. Moreover, performance increased significantly according to the number of features used, reaching a plateau around 136. Finally, the results of this study suggested that kNN was the best algorithm to classify hand resting tremor in patients with PD. Frontiers Media S.A. 2020-07-14 /pmc/articles/PMC7381229/ /pubmed/32766223 http://dx.doi.org/10.3389/fbioe.2020.00778 Text en Copyright © 2020 de Araújo, Santos, de Sá, Furtado, Santos, de Lima, Krejcová, Santos-Lobato, Pinto, Cabral, Belgamo, Callegari, Kleiner, Costa e Silva and Souza. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Bioengineering and Biotechnology de Araújo, Ana Camila Alves Santos, Enzo Gabriel da Rocha de Sá, Karina Santos Guedes Furtado, Viviane Kharine Teixeira Santos, Felipe Augusto de Lima, Ramon Costa Krejcová, Lane Viana Santos-Lobato, Bruno Lopes Pinto, Gustavo Henrique Lima Cabral, André dos Santos Belgamo, Anderson Callegari, Bianca Kleiner, Ana Francisca Rozin Costa e Silva, Anselmo de Athayde Souza, Givago da Silva Hand Resting Tremor Assessment of Healthy and Patients With Parkinson’s Disease: An Exploratory Machine Learning Study |
title | Hand Resting Tremor Assessment of Healthy and Patients With Parkinson’s Disease: An Exploratory Machine Learning Study |
title_full | Hand Resting Tremor Assessment of Healthy and Patients With Parkinson’s Disease: An Exploratory Machine Learning Study |
title_fullStr | Hand Resting Tremor Assessment of Healthy and Patients With Parkinson’s Disease: An Exploratory Machine Learning Study |
title_full_unstemmed | Hand Resting Tremor Assessment of Healthy and Patients With Parkinson’s Disease: An Exploratory Machine Learning Study |
title_short | Hand Resting Tremor Assessment of Healthy and Patients With Parkinson’s Disease: An Exploratory Machine Learning Study |
title_sort | hand resting tremor assessment of healthy and patients with parkinson’s disease: an exploratory machine learning study |
topic | Bioengineering and Biotechnology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7381229/ https://www.ncbi.nlm.nih.gov/pubmed/32766223 http://dx.doi.org/10.3389/fbioe.2020.00778 |
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