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Whole exome sequencing in ADHD trios from single and multi-incident families implicates new candidate genes and highlights polygenic transmission
Several types of genetic alterations occurring at numerous loci have been described in attention deficit hyperactivity disorder (ADHD). However, the role of rare single nucleotide variants (SNVs) remains under investigated. Here, we sought to identify rare SNVs with predicted deleterious effect that...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer International Publishing
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7382449/ https://www.ncbi.nlm.nih.gov/pubmed/32238911 http://dx.doi.org/10.1038/s41431-020-0619-7 |
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author | Al-Mubarak, Bashayer R. Omar, Aisha Baz, Batoul Al-Abdulaziz, Basma Magrashi, Amna I. Al-Yemni, Eman Jabaan, Amjad Monies, Dorota Abouelhoda, Mohamed Abebe, Dejene Ghaziuddin, Mohammad Al-Tassan, Nada A. |
author_facet | Al-Mubarak, Bashayer R. Omar, Aisha Baz, Batoul Al-Abdulaziz, Basma Magrashi, Amna I. Al-Yemni, Eman Jabaan, Amjad Monies, Dorota Abouelhoda, Mohamed Abebe, Dejene Ghaziuddin, Mohammad Al-Tassan, Nada A. |
author_sort | Al-Mubarak, Bashayer R. |
collection | PubMed |
description | Several types of genetic alterations occurring at numerous loci have been described in attention deficit hyperactivity disorder (ADHD). However, the role of rare single nucleotide variants (SNVs) remains under investigated. Here, we sought to identify rare SNVs with predicted deleterious effect that may contribute to ADHD risk. We chose to study ADHD families (including multi-incident) from a population with a high rate of consanguinity in which genetic risk factors tend to accumulate and therefore increasing the chance of detecting risk alleles. We employed whole exome sequencing (WES) to interrogate the entire coding region of 16 trios with ADHD. We also performed enrichment analysis on our final list of genes to identify the overrepresented biological processes. A total of 32 rare variants with predicted damaging effect were identified in 31 genes. At least two variants were detected per proband, most of which were not exclusive to the affected individuals. In addition, the majority of our candidate genes have not been previously described in ADHD including five genes (NEK4, NLE1, PSRC1, PTP4A3, and TMEM183A) that were not previously described in any human condition. Moreover, enrichment analysis highlighted brain-relevant biological themes such as “Glutamatergic synapse”, “Cytoskeleton organization”, and “Ca(2+) pathway”. In conclusion, our findings are in keeping with prior studies demonstrating the highly challenging genetic architecture of ADHD involving low penetrance, variable expressivity and locus heterogeneity. |
format | Online Article Text |
id | pubmed-7382449 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Springer International Publishing |
record_format | MEDLINE/PubMed |
spelling | pubmed-73824492020-07-28 Whole exome sequencing in ADHD trios from single and multi-incident families implicates new candidate genes and highlights polygenic transmission Al-Mubarak, Bashayer R. Omar, Aisha Baz, Batoul Al-Abdulaziz, Basma Magrashi, Amna I. Al-Yemni, Eman Jabaan, Amjad Monies, Dorota Abouelhoda, Mohamed Abebe, Dejene Ghaziuddin, Mohammad Al-Tassan, Nada A. Eur J Hum Genet Article Several types of genetic alterations occurring at numerous loci have been described in attention deficit hyperactivity disorder (ADHD). However, the role of rare single nucleotide variants (SNVs) remains under investigated. Here, we sought to identify rare SNVs with predicted deleterious effect that may contribute to ADHD risk. We chose to study ADHD families (including multi-incident) from a population with a high rate of consanguinity in which genetic risk factors tend to accumulate and therefore increasing the chance of detecting risk alleles. We employed whole exome sequencing (WES) to interrogate the entire coding region of 16 trios with ADHD. We also performed enrichment analysis on our final list of genes to identify the overrepresented biological processes. A total of 32 rare variants with predicted damaging effect were identified in 31 genes. At least two variants were detected per proband, most of which were not exclusive to the affected individuals. In addition, the majority of our candidate genes have not been previously described in ADHD including five genes (NEK4, NLE1, PSRC1, PTP4A3, and TMEM183A) that were not previously described in any human condition. Moreover, enrichment analysis highlighted brain-relevant biological themes such as “Glutamatergic synapse”, “Cytoskeleton organization”, and “Ca(2+) pathway”. In conclusion, our findings are in keeping with prior studies demonstrating the highly challenging genetic architecture of ADHD involving low penetrance, variable expressivity and locus heterogeneity. Springer International Publishing 2020-04-01 2020-08 /pmc/articles/PMC7382449/ /pubmed/32238911 http://dx.doi.org/10.1038/s41431-020-0619-7 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Al-Mubarak, Bashayer R. Omar, Aisha Baz, Batoul Al-Abdulaziz, Basma Magrashi, Amna I. Al-Yemni, Eman Jabaan, Amjad Monies, Dorota Abouelhoda, Mohamed Abebe, Dejene Ghaziuddin, Mohammad Al-Tassan, Nada A. Whole exome sequencing in ADHD trios from single and multi-incident families implicates new candidate genes and highlights polygenic transmission |
title | Whole exome sequencing in ADHD trios from single and multi-incident families implicates new candidate genes and highlights polygenic transmission |
title_full | Whole exome sequencing in ADHD trios from single and multi-incident families implicates new candidate genes and highlights polygenic transmission |
title_fullStr | Whole exome sequencing in ADHD trios from single and multi-incident families implicates new candidate genes and highlights polygenic transmission |
title_full_unstemmed | Whole exome sequencing in ADHD trios from single and multi-incident families implicates new candidate genes and highlights polygenic transmission |
title_short | Whole exome sequencing in ADHD trios from single and multi-incident families implicates new candidate genes and highlights polygenic transmission |
title_sort | whole exome sequencing in adhd trios from single and multi-incident families implicates new candidate genes and highlights polygenic transmission |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7382449/ https://www.ncbi.nlm.nih.gov/pubmed/32238911 http://dx.doi.org/10.1038/s41431-020-0619-7 |
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