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Dataset for homologous proteins in Drosophila melanogaster for SARS-CoV-2/human interactome
Animal modelling for infectious diseases is critical to understand the biology of the pathogens including viruses and to develop therapeutic strategies against it. Herein, we present the sequence homology and expression data analysis of proteins found in Drosophila melanogaster that are orthologous...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7382932/ https://www.ncbi.nlm.nih.gov/pubmed/32775582 http://dx.doi.org/10.1016/j.dib.2020.106082 |
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author | Hussain, Mushtaq Jabeen, Nusrat Shabbir, Sanya Udin, Nasir Aziz, Basma Amanullah, Anusha Raza, Fozia Baig, Ayesha Ashraf |
author_facet | Hussain, Mushtaq Jabeen, Nusrat Shabbir, Sanya Udin, Nasir Aziz, Basma Amanullah, Anusha Raza, Fozia Baig, Ayesha Ashraf |
author_sort | Hussain, Mushtaq |
collection | PubMed |
description | Animal modelling for infectious diseases is critical to understand the biology of the pathogens including viruses and to develop therapeutic strategies against it. Herein, we present the sequence homology and expression data analysis of proteins found in Drosophila melanogaster that are orthologous to human proteins, reported as components of SARS-CoV-2/Human interactome. The dataset enlists sequence homology, query coverage, domain conservation, OrthoMCL and Ensembl Genome Browser support of 326 proteins in D.melanogaster that are potentially orthologous to 417 human proteins reported for their direct physical interactions with 28 proteins encoded by SARS-CoV-2 genome. Expression of these D.melanogaster orthologous genes in 26 anatomical positions are also plotted as heat maps in 27 sets, corresponding to the potential protein interactors for each viral protein. The data could be used to direct experiments and potentially predict their phenotypic and molecular outcome in order to dissect the biological roles and molecular functionality of SARS-CoV-2 proteins in a convenient animal model system like D.melanogaster. |
format | Online Article Text |
id | pubmed-7382932 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-73829322020-07-28 Dataset for homologous proteins in Drosophila melanogaster for SARS-CoV-2/human interactome Hussain, Mushtaq Jabeen, Nusrat Shabbir, Sanya Udin, Nasir Aziz, Basma Amanullah, Anusha Raza, Fozia Baig, Ayesha Ashraf Data Brief Biochemistry, Genetics and Molecular Biology Animal modelling for infectious diseases is critical to understand the biology of the pathogens including viruses and to develop therapeutic strategies against it. Herein, we present the sequence homology and expression data analysis of proteins found in Drosophila melanogaster that are orthologous to human proteins, reported as components of SARS-CoV-2/Human interactome. The dataset enlists sequence homology, query coverage, domain conservation, OrthoMCL and Ensembl Genome Browser support of 326 proteins in D.melanogaster that are potentially orthologous to 417 human proteins reported for their direct physical interactions with 28 proteins encoded by SARS-CoV-2 genome. Expression of these D.melanogaster orthologous genes in 26 anatomical positions are also plotted as heat maps in 27 sets, corresponding to the potential protein interactors for each viral protein. The data could be used to direct experiments and potentially predict their phenotypic and molecular outcome in order to dissect the biological roles and molecular functionality of SARS-CoV-2 proteins in a convenient animal model system like D.melanogaster. Elsevier 2020-07-26 /pmc/articles/PMC7382932/ /pubmed/32775582 http://dx.doi.org/10.1016/j.dib.2020.106082 Text en © 2020 The Author(s) http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Biochemistry, Genetics and Molecular Biology Hussain, Mushtaq Jabeen, Nusrat Shabbir, Sanya Udin, Nasir Aziz, Basma Amanullah, Anusha Raza, Fozia Baig, Ayesha Ashraf Dataset for homologous proteins in Drosophila melanogaster for SARS-CoV-2/human interactome |
title | Dataset for homologous proteins in Drosophila melanogaster for SARS-CoV-2/human interactome |
title_full | Dataset for homologous proteins in Drosophila melanogaster for SARS-CoV-2/human interactome |
title_fullStr | Dataset for homologous proteins in Drosophila melanogaster for SARS-CoV-2/human interactome |
title_full_unstemmed | Dataset for homologous proteins in Drosophila melanogaster for SARS-CoV-2/human interactome |
title_short | Dataset for homologous proteins in Drosophila melanogaster for SARS-CoV-2/human interactome |
title_sort | dataset for homologous proteins in drosophila melanogaster for sars-cov-2/human interactome |
topic | Biochemistry, Genetics and Molecular Biology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7382932/ https://www.ncbi.nlm.nih.gov/pubmed/32775582 http://dx.doi.org/10.1016/j.dib.2020.106082 |
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