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Dataset for homologous proteins in Drosophila melanogaster for SARS-CoV-2/human interactome

Animal modelling for infectious diseases is critical to understand the biology of the pathogens including viruses and to develop therapeutic strategies against it. Herein, we present the sequence homology and expression data analysis of proteins found in Drosophila melanogaster that are orthologous...

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Autores principales: Hussain, Mushtaq, Jabeen, Nusrat, Shabbir, Sanya, Udin, Nasir, Aziz, Basma, Amanullah, Anusha, Raza, Fozia, Baig, Ayesha Ashraf
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7382932/
https://www.ncbi.nlm.nih.gov/pubmed/32775582
http://dx.doi.org/10.1016/j.dib.2020.106082
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author Hussain, Mushtaq
Jabeen, Nusrat
Shabbir, Sanya
Udin, Nasir
Aziz, Basma
Amanullah, Anusha
Raza, Fozia
Baig, Ayesha Ashraf
author_facet Hussain, Mushtaq
Jabeen, Nusrat
Shabbir, Sanya
Udin, Nasir
Aziz, Basma
Amanullah, Anusha
Raza, Fozia
Baig, Ayesha Ashraf
author_sort Hussain, Mushtaq
collection PubMed
description Animal modelling for infectious diseases is critical to understand the biology of the pathogens including viruses and to develop therapeutic strategies against it. Herein, we present the sequence homology and expression data analysis of proteins found in Drosophila melanogaster that are orthologous to human proteins, reported as components of SARS-CoV-2/Human interactome. The dataset enlists sequence homology, query coverage, domain conservation, OrthoMCL and Ensembl Genome Browser support of 326 proteins in D.melanogaster that are potentially orthologous to 417 human proteins reported for their direct physical interactions with 28 proteins encoded by SARS-CoV-2 genome. Expression of these D.melanogaster orthologous genes in 26 anatomical positions are also plotted as heat maps in 27 sets, corresponding to the potential protein interactors for each viral protein. The data could be used to direct experiments and potentially predict their phenotypic and molecular outcome in order to dissect the biological roles and molecular functionality of SARS-CoV-2 proteins in a convenient animal model system like D.melanogaster.
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spelling pubmed-73829322020-07-28 Dataset for homologous proteins in Drosophila melanogaster for SARS-CoV-2/human interactome Hussain, Mushtaq Jabeen, Nusrat Shabbir, Sanya Udin, Nasir Aziz, Basma Amanullah, Anusha Raza, Fozia Baig, Ayesha Ashraf Data Brief Biochemistry, Genetics and Molecular Biology Animal modelling for infectious diseases is critical to understand the biology of the pathogens including viruses and to develop therapeutic strategies against it. Herein, we present the sequence homology and expression data analysis of proteins found in Drosophila melanogaster that are orthologous to human proteins, reported as components of SARS-CoV-2/Human interactome. The dataset enlists sequence homology, query coverage, domain conservation, OrthoMCL and Ensembl Genome Browser support of 326 proteins in D.melanogaster that are potentially orthologous to 417 human proteins reported for their direct physical interactions with 28 proteins encoded by SARS-CoV-2 genome. Expression of these D.melanogaster orthologous genes in 26 anatomical positions are also plotted as heat maps in 27 sets, corresponding to the potential protein interactors for each viral protein. The data could be used to direct experiments and potentially predict their phenotypic and molecular outcome in order to dissect the biological roles and molecular functionality of SARS-CoV-2 proteins in a convenient animal model system like D.melanogaster. Elsevier 2020-07-26 /pmc/articles/PMC7382932/ /pubmed/32775582 http://dx.doi.org/10.1016/j.dib.2020.106082 Text en © 2020 The Author(s) http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Biochemistry, Genetics and Molecular Biology
Hussain, Mushtaq
Jabeen, Nusrat
Shabbir, Sanya
Udin, Nasir
Aziz, Basma
Amanullah, Anusha
Raza, Fozia
Baig, Ayesha Ashraf
Dataset for homologous proteins in Drosophila melanogaster for SARS-CoV-2/human interactome
title Dataset for homologous proteins in Drosophila melanogaster for SARS-CoV-2/human interactome
title_full Dataset for homologous proteins in Drosophila melanogaster for SARS-CoV-2/human interactome
title_fullStr Dataset for homologous proteins in Drosophila melanogaster for SARS-CoV-2/human interactome
title_full_unstemmed Dataset for homologous proteins in Drosophila melanogaster for SARS-CoV-2/human interactome
title_short Dataset for homologous proteins in Drosophila melanogaster for SARS-CoV-2/human interactome
title_sort dataset for homologous proteins in drosophila melanogaster for sars-cov-2/human interactome
topic Biochemistry, Genetics and Molecular Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7382932/
https://www.ncbi.nlm.nih.gov/pubmed/32775582
http://dx.doi.org/10.1016/j.dib.2020.106082
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