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Open Development and Clinical Validation of Multiple 3D-Printed Nasopharyngeal Collection Swabs: Rapid Resolution of a Critical COVID-19 Testing Bottleneck

The pandemic caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has caused a severe international shortage of the nasopharyngeal swabs that are required for collection of optimal specimens, creating a critical bottleneck blocking clinical laboratories’ ability to perform high-sen...

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Autores principales: Callahan, Cody J., Lee, Rose, Zulauf, Katelyn E., Tamburello, Lauren, Smith, Kenneth P., Previtera, Joe, Cheng, Annie, Green, Alex, Abdul Azim, Ahmed, Yano, Amanda, Doraiswami, Nancy, Kirby, James E., Arnaout, Ramy A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7383530/
https://www.ncbi.nlm.nih.gov/pubmed/32393482
http://dx.doi.org/10.1128/JCM.00876-20
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author Callahan, Cody J.
Lee, Rose
Zulauf, Katelyn E.
Tamburello, Lauren
Smith, Kenneth P.
Previtera, Joe
Cheng, Annie
Green, Alex
Abdul Azim, Ahmed
Yano, Amanda
Doraiswami, Nancy
Kirby, James E.
Arnaout, Ramy A.
author_facet Callahan, Cody J.
Lee, Rose
Zulauf, Katelyn E.
Tamburello, Lauren
Smith, Kenneth P.
Previtera, Joe
Cheng, Annie
Green, Alex
Abdul Azim, Ahmed
Yano, Amanda
Doraiswami, Nancy
Kirby, James E.
Arnaout, Ramy A.
author_sort Callahan, Cody J.
collection PubMed
description The pandemic caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has caused a severe international shortage of the nasopharyngeal swabs that are required for collection of optimal specimens, creating a critical bottleneck blocking clinical laboratories’ ability to perform high-sensitivity virological testing for SARS-CoV-2. To address this crisis, we designed and executed an innovative, cooperative, rapid-response translational-research program that brought together health care workers, manufacturers, and scientists to emergently develop and clinically validate new swabs for immediate mass production by 3D printing. We performed a multistep preclinical evaluation of 160 swab designs and 48 materials from 24 companies, laboratories, and individuals, and we shared results and other feedback via a public data repository (http://github.com/rarnaout/Covidswab/). We validated four prototypes through an institutional review board (IRB)-approved clinical trial that involved 276 outpatient volunteers who presented to our hospital’s drive-through testing center with symptoms suspicious for COVID-19. Each participant was swabbed with a reference swab (the control) and a prototype, and SARS-CoV-2 reverse transcriptase PCR (RT-PCR) results were compared. All prototypes displayed excellent concordance with the control (κ = 0.85 to 0.89). Cycle threshold (C(T)) values were not significantly different between each prototype and the control, supporting the new swabs’ noninferiority (Mann-Whitney U [MWU] test, P > 0.05). Study staff preferred one of the prototypes over the others and preferred the control swab overall. The total time elapsed between identification of the problem and validation of the first prototype was 22 days. Contact information for ordering can be found at http://printedswabs.org. Our experience holds lessons for the rapid development, validation, and deployment of new technology for this pandemic and beyond.
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spelling pubmed-73835302020-07-31 Open Development and Clinical Validation of Multiple 3D-Printed Nasopharyngeal Collection Swabs: Rapid Resolution of a Critical COVID-19 Testing Bottleneck Callahan, Cody J. Lee, Rose Zulauf, Katelyn E. Tamburello, Lauren Smith, Kenneth P. Previtera, Joe Cheng, Annie Green, Alex Abdul Azim, Ahmed Yano, Amanda Doraiswami, Nancy Kirby, James E. Arnaout, Ramy A. J Clin Microbiol Virology The pandemic caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has caused a severe international shortage of the nasopharyngeal swabs that are required for collection of optimal specimens, creating a critical bottleneck blocking clinical laboratories’ ability to perform high-sensitivity virological testing for SARS-CoV-2. To address this crisis, we designed and executed an innovative, cooperative, rapid-response translational-research program that brought together health care workers, manufacturers, and scientists to emergently develop and clinically validate new swabs for immediate mass production by 3D printing. We performed a multistep preclinical evaluation of 160 swab designs and 48 materials from 24 companies, laboratories, and individuals, and we shared results and other feedback via a public data repository (http://github.com/rarnaout/Covidswab/). We validated four prototypes through an institutional review board (IRB)-approved clinical trial that involved 276 outpatient volunteers who presented to our hospital’s drive-through testing center with symptoms suspicious for COVID-19. Each participant was swabbed with a reference swab (the control) and a prototype, and SARS-CoV-2 reverse transcriptase PCR (RT-PCR) results were compared. All prototypes displayed excellent concordance with the control (κ = 0.85 to 0.89). Cycle threshold (C(T)) values were not significantly different between each prototype and the control, supporting the new swabs’ noninferiority (Mann-Whitney U [MWU] test, P > 0.05). Study staff preferred one of the prototypes over the others and preferred the control swab overall. The total time elapsed between identification of the problem and validation of the first prototype was 22 days. Contact information for ordering can be found at http://printedswabs.org. Our experience holds lessons for the rapid development, validation, and deployment of new technology for this pandemic and beyond. American Society for Microbiology 2020-07-23 /pmc/articles/PMC7383530/ /pubmed/32393482 http://dx.doi.org/10.1128/JCM.00876-20 Text en Copyright © 2020 Callahan et al. https://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Virology
Callahan, Cody J.
Lee, Rose
Zulauf, Katelyn E.
Tamburello, Lauren
Smith, Kenneth P.
Previtera, Joe
Cheng, Annie
Green, Alex
Abdul Azim, Ahmed
Yano, Amanda
Doraiswami, Nancy
Kirby, James E.
Arnaout, Ramy A.
Open Development and Clinical Validation of Multiple 3D-Printed Nasopharyngeal Collection Swabs: Rapid Resolution of a Critical COVID-19 Testing Bottleneck
title Open Development and Clinical Validation of Multiple 3D-Printed Nasopharyngeal Collection Swabs: Rapid Resolution of a Critical COVID-19 Testing Bottleneck
title_full Open Development and Clinical Validation of Multiple 3D-Printed Nasopharyngeal Collection Swabs: Rapid Resolution of a Critical COVID-19 Testing Bottleneck
title_fullStr Open Development and Clinical Validation of Multiple 3D-Printed Nasopharyngeal Collection Swabs: Rapid Resolution of a Critical COVID-19 Testing Bottleneck
title_full_unstemmed Open Development and Clinical Validation of Multiple 3D-Printed Nasopharyngeal Collection Swabs: Rapid Resolution of a Critical COVID-19 Testing Bottleneck
title_short Open Development and Clinical Validation of Multiple 3D-Printed Nasopharyngeal Collection Swabs: Rapid Resolution of a Critical COVID-19 Testing Bottleneck
title_sort open development and clinical validation of multiple 3d-printed nasopharyngeal collection swabs: rapid resolution of a critical covid-19 testing bottleneck
topic Virology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7383530/
https://www.ncbi.nlm.nih.gov/pubmed/32393482
http://dx.doi.org/10.1128/JCM.00876-20
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