Cargando…

Performance of Abbott ID Now COVID-19 Rapid Nucleic Acid Amplification Test Using Nasopharyngeal Swabs Transported in Viral Transport Media and Dry Nasal Swabs in a New York City Academic Institution

The recent emergence of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic has posed formidable challenges for clinical laboratories seeking reliable laboratory diagnostic confirmation. The swift advance of the crisis in the United States has led to Emergency Use Authorization...

Descripción completa

Detalles Bibliográficos
Autores principales: Basu, Atreyee, Zinger, Tatyana, Inglima, Kenneth, Woo, Kar-mun, Atie, Onome, Yurasits, Lauren, See, Benjamin, Aguero-Rosenfeld, Maria E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7383552/
https://www.ncbi.nlm.nih.gov/pubmed/32471894
http://dx.doi.org/10.1128/JCM.01136-20
_version_ 1783563441359814656
author Basu, Atreyee
Zinger, Tatyana
Inglima, Kenneth
Woo, Kar-mun
Atie, Onome
Yurasits, Lauren
See, Benjamin
Aguero-Rosenfeld, Maria E.
author_facet Basu, Atreyee
Zinger, Tatyana
Inglima, Kenneth
Woo, Kar-mun
Atie, Onome
Yurasits, Lauren
See, Benjamin
Aguero-Rosenfeld, Maria E.
author_sort Basu, Atreyee
collection PubMed
description The recent emergence of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic has posed formidable challenges for clinical laboratories seeking reliable laboratory diagnostic confirmation. The swift advance of the crisis in the United States has led to Emergency Use Authorization (EUA) facilitating the availability of molecular diagnostic assays without the more rigorous examination to which tests are normally subjected prior to FDA approval. Our laboratory currently uses two real-time reverse transcription-PCR (RT-PCR) platforms, the Roche Cobas SARS-CoV2 and the Cepheid Xpert Xpress SARS-CoV-2. The two platforms demonstrate comparable performances; however, the run times for each assay are 3.5 h and 45 min, respectively. In search for a platform with a shorter turnaround time, we sought to evaluate the recently released Abbott ID Now COVID-19 assay, which is capable of producing positive results in as little as 5 min. We present here the results of comparisons between Abbott ID Now COVID-19 and Cepheid Xpert Xpress SARS-CoV-2 using nasopharyngeal swabs transported in viral transport media and comparisons between Abbott ID Now COVID-19 and Cepheid Xpert Xpress SARS-CoV-2 using nasopharyngeal swabs transported in viral transport media for Cepheid and dry nasal swabs for Abbott ID Now. Regardless of method of collection and sample type, Abbott ID Now COVID-19 had negative results in a third of the samples that tested positive by Cepheid Xpert Xpress when using nasopharyngeal swabs in viral transport media and 45% when using dry nasal swabs.
format Online
Article
Text
id pubmed-7383552
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher American Society for Microbiology
record_format MEDLINE/PubMed
spelling pubmed-73835522020-07-31 Performance of Abbott ID Now COVID-19 Rapid Nucleic Acid Amplification Test Using Nasopharyngeal Swabs Transported in Viral Transport Media and Dry Nasal Swabs in a New York City Academic Institution Basu, Atreyee Zinger, Tatyana Inglima, Kenneth Woo, Kar-mun Atie, Onome Yurasits, Lauren See, Benjamin Aguero-Rosenfeld, Maria E. J Clin Microbiol Virology The recent emergence of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic has posed formidable challenges for clinical laboratories seeking reliable laboratory diagnostic confirmation. The swift advance of the crisis in the United States has led to Emergency Use Authorization (EUA) facilitating the availability of molecular diagnostic assays without the more rigorous examination to which tests are normally subjected prior to FDA approval. Our laboratory currently uses two real-time reverse transcription-PCR (RT-PCR) platforms, the Roche Cobas SARS-CoV2 and the Cepheid Xpert Xpress SARS-CoV-2. The two platforms demonstrate comparable performances; however, the run times for each assay are 3.5 h and 45 min, respectively. In search for a platform with a shorter turnaround time, we sought to evaluate the recently released Abbott ID Now COVID-19 assay, which is capable of producing positive results in as little as 5 min. We present here the results of comparisons between Abbott ID Now COVID-19 and Cepheid Xpert Xpress SARS-CoV-2 using nasopharyngeal swabs transported in viral transport media and comparisons between Abbott ID Now COVID-19 and Cepheid Xpert Xpress SARS-CoV-2 using nasopharyngeal swabs transported in viral transport media for Cepheid and dry nasal swabs for Abbott ID Now. Regardless of method of collection and sample type, Abbott ID Now COVID-19 had negative results in a third of the samples that tested positive by Cepheid Xpert Xpress when using nasopharyngeal swabs in viral transport media and 45% when using dry nasal swabs. American Society for Microbiology 2020-07-23 /pmc/articles/PMC7383552/ /pubmed/32471894 http://dx.doi.org/10.1128/JCM.01136-20 Text en Copyright © 2020 American Society for Microbiology. All Rights Reserved (https://doi.org/10.1128/ASMCopyrightv2) . https://doi.org/10.1128/ASMCopyrightv2 This article is made available via the PMC Open Access Subset for unrestricted noncommercial re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Virology
Basu, Atreyee
Zinger, Tatyana
Inglima, Kenneth
Woo, Kar-mun
Atie, Onome
Yurasits, Lauren
See, Benjamin
Aguero-Rosenfeld, Maria E.
Performance of Abbott ID Now COVID-19 Rapid Nucleic Acid Amplification Test Using Nasopharyngeal Swabs Transported in Viral Transport Media and Dry Nasal Swabs in a New York City Academic Institution
title Performance of Abbott ID Now COVID-19 Rapid Nucleic Acid Amplification Test Using Nasopharyngeal Swabs Transported in Viral Transport Media and Dry Nasal Swabs in a New York City Academic Institution
title_full Performance of Abbott ID Now COVID-19 Rapid Nucleic Acid Amplification Test Using Nasopharyngeal Swabs Transported in Viral Transport Media and Dry Nasal Swabs in a New York City Academic Institution
title_fullStr Performance of Abbott ID Now COVID-19 Rapid Nucleic Acid Amplification Test Using Nasopharyngeal Swabs Transported in Viral Transport Media and Dry Nasal Swabs in a New York City Academic Institution
title_full_unstemmed Performance of Abbott ID Now COVID-19 Rapid Nucleic Acid Amplification Test Using Nasopharyngeal Swabs Transported in Viral Transport Media and Dry Nasal Swabs in a New York City Academic Institution
title_short Performance of Abbott ID Now COVID-19 Rapid Nucleic Acid Amplification Test Using Nasopharyngeal Swabs Transported in Viral Transport Media and Dry Nasal Swabs in a New York City Academic Institution
title_sort performance of abbott id now covid-19 rapid nucleic acid amplification test using nasopharyngeal swabs transported in viral transport media and dry nasal swabs in a new york city academic institution
topic Virology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7383552/
https://www.ncbi.nlm.nih.gov/pubmed/32471894
http://dx.doi.org/10.1128/JCM.01136-20
work_keys_str_mv AT basuatreyee performanceofabbottidnowcovid19rapidnucleicacidamplificationtestusingnasopharyngealswabstransportedinviraltransportmediaanddrynasalswabsinanewyorkcityacademicinstitution
AT zingertatyana performanceofabbottidnowcovid19rapidnucleicacidamplificationtestusingnasopharyngealswabstransportedinviraltransportmediaanddrynasalswabsinanewyorkcityacademicinstitution
AT inglimakenneth performanceofabbottidnowcovid19rapidnucleicacidamplificationtestusingnasopharyngealswabstransportedinviraltransportmediaanddrynasalswabsinanewyorkcityacademicinstitution
AT wookarmun performanceofabbottidnowcovid19rapidnucleicacidamplificationtestusingnasopharyngealswabstransportedinviraltransportmediaanddrynasalswabsinanewyorkcityacademicinstitution
AT atieonome performanceofabbottidnowcovid19rapidnucleicacidamplificationtestusingnasopharyngealswabstransportedinviraltransportmediaanddrynasalswabsinanewyorkcityacademicinstitution
AT yurasitslauren performanceofabbottidnowcovid19rapidnucleicacidamplificationtestusingnasopharyngealswabstransportedinviraltransportmediaanddrynasalswabsinanewyorkcityacademicinstitution
AT seebenjamin performanceofabbottidnowcovid19rapidnucleicacidamplificationtestusingnasopharyngealswabstransportedinviraltransportmediaanddrynasalswabsinanewyorkcityacademicinstitution
AT aguerorosenfeldmariae performanceofabbottidnowcovid19rapidnucleicacidamplificationtestusingnasopharyngealswabstransportedinviraltransportmediaanddrynasalswabsinanewyorkcityacademicinstitution