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MetaboMAPS: Pathway sharing and multi-omics data visualization in metabolic context
Metabolic pathways are an important part of systems biology research since they illustrate complex interactions between metabolites, enzymes, and regulators. Pathway maps are drawn to elucidate metabolism or to set data in a metabolic context. We present MetaboMAPS, a web-based platform to visualize...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
F1000 Research Limited
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7383707/ https://www.ncbi.nlm.nih.gov/pubmed/32765840 http://dx.doi.org/10.12688/f1000research.23427.2 |
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author | Koblitz, Julia Schomburg, Dietmar Neumann-Schaal, Meina |
author_facet | Koblitz, Julia Schomburg, Dietmar Neumann-Schaal, Meina |
author_sort | Koblitz, Julia |
collection | PubMed |
description | Metabolic pathways are an important part of systems biology research since they illustrate complex interactions between metabolites, enzymes, and regulators. Pathway maps are drawn to elucidate metabolism or to set data in a metabolic context. We present MetaboMAPS, a web-based platform to visualize numerical data on individual metabolic pathway maps. Metabolic maps can be stored, distributed and downloaded in SVG-format. MetaboMAPS was designed for users without computational background and supports pathway sharing without strict conventions. In addition to existing applications that established standards for well-studied pathways, MetaboMAPS offers a niche for individual, customized pathways beyond common knowledge, supporting ongoing research by creating publication-ready visualizations of experimental data. |
format | Online Article Text |
id | pubmed-7383707 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | F1000 Research Limited |
record_format | MEDLINE/PubMed |
spelling | pubmed-73837072020-08-05 MetaboMAPS: Pathway sharing and multi-omics data visualization in metabolic context Koblitz, Julia Schomburg, Dietmar Neumann-Schaal, Meina F1000Res Software Tool Article Metabolic pathways are an important part of systems biology research since they illustrate complex interactions between metabolites, enzymes, and regulators. Pathway maps are drawn to elucidate metabolism or to set data in a metabolic context. We present MetaboMAPS, a web-based platform to visualize numerical data on individual metabolic pathway maps. Metabolic maps can be stored, distributed and downloaded in SVG-format. MetaboMAPS was designed for users without computational background and supports pathway sharing without strict conventions. In addition to existing applications that established standards for well-studied pathways, MetaboMAPS offers a niche for individual, customized pathways beyond common knowledge, supporting ongoing research by creating publication-ready visualizations of experimental data. F1000 Research Limited 2020-07-17 /pmc/articles/PMC7383707/ /pubmed/32765840 http://dx.doi.org/10.12688/f1000research.23427.2 Text en Copyright: © 2020 Koblitz J et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Software Tool Article Koblitz, Julia Schomburg, Dietmar Neumann-Schaal, Meina MetaboMAPS: Pathway sharing and multi-omics data visualization in metabolic context |
title | MetaboMAPS: Pathway sharing and multi-omics data visualization in metabolic context |
title_full | MetaboMAPS: Pathway sharing and multi-omics data visualization in metabolic context |
title_fullStr | MetaboMAPS: Pathway sharing and multi-omics data visualization in metabolic context |
title_full_unstemmed | MetaboMAPS: Pathway sharing and multi-omics data visualization in metabolic context |
title_short | MetaboMAPS: Pathway sharing and multi-omics data visualization in metabolic context |
title_sort | metabomaps: pathway sharing and multi-omics data visualization in metabolic context |
topic | Software Tool Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7383707/ https://www.ncbi.nlm.nih.gov/pubmed/32765840 http://dx.doi.org/10.12688/f1000research.23427.2 |
work_keys_str_mv | AT koblitzjulia metabomapspathwaysharingandmultiomicsdatavisualizationinmetaboliccontext AT schomburgdietmar metabomapspathwaysharingandmultiomicsdatavisualizationinmetaboliccontext AT neumannschaalmeina metabomapspathwaysharingandmultiomicsdatavisualizationinmetaboliccontext |