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An efficient module-less synthesis approach for Digital Microfluidic Biochip

Digital Microfluidic Biochips (DMFBs) will require error-free synthesis techniques which can function at much higher speed while implementing on real-time systems and capable of tackling more complex assay operations. Until now various bio-assays are successfully implemented based on different mixin...

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Autores principales: Chakraborty, Sarit, Chakraborty, Susanta
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7385941/
https://www.ncbi.nlm.nih.gov/pubmed/32835163
http://dx.doi.org/10.1007/s42452-020-3173-6
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author Chakraborty, Sarit
Chakraborty, Susanta
author_facet Chakraborty, Sarit
Chakraborty, Susanta
author_sort Chakraborty, Sarit
collection PubMed
description Digital Microfluidic Biochips (DMFBs) will require error-free synthesis techniques which can function at much higher speed while implementing on real-time systems and capable of tackling more complex assay operations. Until now various bio-assays are successfully implemented based on different mixing modules present on such lab-on-chips. In present work, the concept of such dedicated virtual modules has been eliminated and a novel module-less-synthesis (MLS) method is proposed for accomplishing high-performance bio-protocols. Various shift-patterns (movements) of the micro-droplets are identified to accomplish entire mixing in lesser time compared to earlier module-based synthesis methods. We have also computed the percentage of mixing accomplishment for each directional-shift of the mixer-droplet. However, path congestion problem and operational errors are inevitable in MLS approach. Hence, the path congestion and washing problem in MLS is addressed by tweaking the earlier MLS approach and a new modified-MLS (MMLS) method is proposed. Finally, washing optimization technique on MMLS method is also given. Different real-life bio assays like PCR, IVD are tested with the proposed technique as well as synthetic benchmarks (hard test benches) are also incorporated in the experiments. For both kind of benchmarks synthesis performance improved with bioassay completion time ([Formula: see text] ) significantly reduced compared to existing synthesis approaches on DMFB platform.
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spelling pubmed-73859412020-07-28 An efficient module-less synthesis approach for Digital Microfluidic Biochip Chakraborty, Sarit Chakraborty, Susanta SN Appl Sci Research Article Digital Microfluidic Biochips (DMFBs) will require error-free synthesis techniques which can function at much higher speed while implementing on real-time systems and capable of tackling more complex assay operations. Until now various bio-assays are successfully implemented based on different mixing modules present on such lab-on-chips. In present work, the concept of such dedicated virtual modules has been eliminated and a novel module-less-synthesis (MLS) method is proposed for accomplishing high-performance bio-protocols. Various shift-patterns (movements) of the micro-droplets are identified to accomplish entire mixing in lesser time compared to earlier module-based synthesis methods. We have also computed the percentage of mixing accomplishment for each directional-shift of the mixer-droplet. However, path congestion problem and operational errors are inevitable in MLS approach. Hence, the path congestion and washing problem in MLS is addressed by tweaking the earlier MLS approach and a new modified-MLS (MMLS) method is proposed. Finally, washing optimization technique on MMLS method is also given. Different real-life bio assays like PCR, IVD are tested with the proposed technique as well as synthetic benchmarks (hard test benches) are also incorporated in the experiments. For both kind of benchmarks synthesis performance improved with bioassay completion time ([Formula: see text] ) significantly reduced compared to existing synthesis approaches on DMFB platform. Springer International Publishing 2020-07-28 2020 /pmc/articles/PMC7385941/ /pubmed/32835163 http://dx.doi.org/10.1007/s42452-020-3173-6 Text en © Springer Nature Switzerland AG 2020 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Research Article
Chakraborty, Sarit
Chakraborty, Susanta
An efficient module-less synthesis approach for Digital Microfluidic Biochip
title An efficient module-less synthesis approach for Digital Microfluidic Biochip
title_full An efficient module-less synthesis approach for Digital Microfluidic Biochip
title_fullStr An efficient module-less synthesis approach for Digital Microfluidic Biochip
title_full_unstemmed An efficient module-less synthesis approach for Digital Microfluidic Biochip
title_short An efficient module-less synthesis approach for Digital Microfluidic Biochip
title_sort efficient module-less synthesis approach for digital microfluidic biochip
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7385941/
https://www.ncbi.nlm.nih.gov/pubmed/32835163
http://dx.doi.org/10.1007/s42452-020-3173-6
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