Cargando…

Standardizing Single-Frame Phase Singularity Identification Algorithms and Parameters in Phase Mapping During Human Atrial Fibrillation

PURPOSE: Recent investigations failed to reproduce the positive rotor-guided ablation outcomes shown by initial studies for treating persistent atrial fibrillation (persAF). Phase singularity (PS) is an important feature for AF driver detection, but algorithms for automated PS identification differ....

Descripción completa

Detalles Bibliográficos
Autores principales: Li, Xin, Almeida, Tiago P., Dastagir, Nawshin, Guillem, María S., Salinet, João, Chu, Gavin S., Stafford, Peter J., Schlindwein, Fernando S., Ng, G. André
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7386053/
https://www.ncbi.nlm.nih.gov/pubmed/32792983
http://dx.doi.org/10.3389/fphys.2020.00869
_version_ 1783563878989299712
author Li, Xin
Almeida, Tiago P.
Dastagir, Nawshin
Guillem, María S.
Salinet, João
Chu, Gavin S.
Stafford, Peter J.
Schlindwein, Fernando S.
Ng, G. André
author_facet Li, Xin
Almeida, Tiago P.
Dastagir, Nawshin
Guillem, María S.
Salinet, João
Chu, Gavin S.
Stafford, Peter J.
Schlindwein, Fernando S.
Ng, G. André
author_sort Li, Xin
collection PubMed
description PURPOSE: Recent investigations failed to reproduce the positive rotor-guided ablation outcomes shown by initial studies for treating persistent atrial fibrillation (persAF). Phase singularity (PS) is an important feature for AF driver detection, but algorithms for automated PS identification differ. We aim to investigate the performance of four different techniques for automated PS detection. METHODS: 2048-channel virtual electrogram (VEGM) and electrocardiogram signals were collected for 30 s from 10 patients undergoing persAF ablation. QRST-subtraction was performed and VEGMs were processed using sinusoidal wavelet reconstruction. The phase was obtained using Hilbert transform. PSs were detected using four algorithms: (1) 2D image processing based and neighbor-indexing algorithm; (2) 3D neighbor-indexing algorithm; (3) 2D kernel convolutional algorithm estimating topological charge; (4) topological charge estimation on 3D mesh. PS annotations were compared using the structural similarity index (SSIM) and Pearson’s correlation coefficient (CORR). Optimized parameters to improve detection accuracy were found for all four algorithms using F(β) score and 10-fold cross-validation compared with manual annotation. Local clustering with density-based spatial clustering of applications with noise (DBSCAN) was proposed to improve algorithms 3 and 4. RESULTS: The PS density maps created by each algorithm with default parameters were poorly correlated. Phase gradient threshold and search radius (or kernels) were shown to affect PS detections. The processing times for the algorithms were significantly different (p < 0.0001). The F(β) scores for algorithms 1, 2, 3, 3 + DBSCAN, 4 and 4 + DBSCAN were 0.547, 0.645, 0.742, 0.828, 0.656, and 0.831. Algorithm 4 + DBSCAN achieved the best classification performance with acceptable processing time (2.0 ± 0.3 s). CONCLUSION: AF driver identification is dependent on the PS detection algorithms and their parameters, which could explain some of the inconsistencies in rotor-guided ablation outcomes in different studies. For 3D triangulated meshes, algorithm 4 + DBSCAN with optimal parameters was the best solution for real-time, automated PS detection due to accuracy and speed. Similarly, algorithm 3 + DBSCAN with optimal parameters is preferred for uniform 2D meshes. Such algorithms – and parameters – should be preferred in future clinical studies for identifying AF drivers and minimizing methodological heterogeneities. This would facilitate comparisons in rotor-guided ablation outcomes in future works.
format Online
Article
Text
id pubmed-7386053
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-73860532020-08-12 Standardizing Single-Frame Phase Singularity Identification Algorithms and Parameters in Phase Mapping During Human Atrial Fibrillation Li, Xin Almeida, Tiago P. Dastagir, Nawshin Guillem, María S. Salinet, João Chu, Gavin S. Stafford, Peter J. Schlindwein, Fernando S. Ng, G. André Front Physiol Physiology PURPOSE: Recent investigations failed to reproduce the positive rotor-guided ablation outcomes shown by initial studies for treating persistent atrial fibrillation (persAF). Phase singularity (PS) is an important feature for AF driver detection, but algorithms for automated PS identification differ. We aim to investigate the performance of four different techniques for automated PS detection. METHODS: 2048-channel virtual electrogram (VEGM) and electrocardiogram signals were collected for 30 s from 10 patients undergoing persAF ablation. QRST-subtraction was performed and VEGMs were processed using sinusoidal wavelet reconstruction. The phase was obtained using Hilbert transform. PSs were detected using four algorithms: (1) 2D image processing based and neighbor-indexing algorithm; (2) 3D neighbor-indexing algorithm; (3) 2D kernel convolutional algorithm estimating topological charge; (4) topological charge estimation on 3D mesh. PS annotations were compared using the structural similarity index (SSIM) and Pearson’s correlation coefficient (CORR). Optimized parameters to improve detection accuracy were found for all four algorithms using F(β) score and 10-fold cross-validation compared with manual annotation. Local clustering with density-based spatial clustering of applications with noise (DBSCAN) was proposed to improve algorithms 3 and 4. RESULTS: The PS density maps created by each algorithm with default parameters were poorly correlated. Phase gradient threshold and search radius (or kernels) were shown to affect PS detections. The processing times for the algorithms were significantly different (p < 0.0001). The F(β) scores for algorithms 1, 2, 3, 3 + DBSCAN, 4 and 4 + DBSCAN were 0.547, 0.645, 0.742, 0.828, 0.656, and 0.831. Algorithm 4 + DBSCAN achieved the best classification performance with acceptable processing time (2.0 ± 0.3 s). CONCLUSION: AF driver identification is dependent on the PS detection algorithms and their parameters, which could explain some of the inconsistencies in rotor-guided ablation outcomes in different studies. For 3D triangulated meshes, algorithm 4 + DBSCAN with optimal parameters was the best solution for real-time, automated PS detection due to accuracy and speed. Similarly, algorithm 3 + DBSCAN with optimal parameters is preferred for uniform 2D meshes. Such algorithms – and parameters – should be preferred in future clinical studies for identifying AF drivers and minimizing methodological heterogeneities. This would facilitate comparisons in rotor-guided ablation outcomes in future works. Frontiers Media S.A. 2020-07-21 /pmc/articles/PMC7386053/ /pubmed/32792983 http://dx.doi.org/10.3389/fphys.2020.00869 Text en Copyright © 2020 Li, Almeida, Dastagir, Guillem, Salinet, Chu, Stafford, Schlindwein and Ng. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Physiology
Li, Xin
Almeida, Tiago P.
Dastagir, Nawshin
Guillem, María S.
Salinet, João
Chu, Gavin S.
Stafford, Peter J.
Schlindwein, Fernando S.
Ng, G. André
Standardizing Single-Frame Phase Singularity Identification Algorithms and Parameters in Phase Mapping During Human Atrial Fibrillation
title Standardizing Single-Frame Phase Singularity Identification Algorithms and Parameters in Phase Mapping During Human Atrial Fibrillation
title_full Standardizing Single-Frame Phase Singularity Identification Algorithms and Parameters in Phase Mapping During Human Atrial Fibrillation
title_fullStr Standardizing Single-Frame Phase Singularity Identification Algorithms and Parameters in Phase Mapping During Human Atrial Fibrillation
title_full_unstemmed Standardizing Single-Frame Phase Singularity Identification Algorithms and Parameters in Phase Mapping During Human Atrial Fibrillation
title_short Standardizing Single-Frame Phase Singularity Identification Algorithms and Parameters in Phase Mapping During Human Atrial Fibrillation
title_sort standardizing single-frame phase singularity identification algorithms and parameters in phase mapping during human atrial fibrillation
topic Physiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7386053/
https://www.ncbi.nlm.nih.gov/pubmed/32792983
http://dx.doi.org/10.3389/fphys.2020.00869
work_keys_str_mv AT lixin standardizingsingleframephasesingularityidentificationalgorithmsandparametersinphasemappingduringhumanatrialfibrillation
AT almeidatiagop standardizingsingleframephasesingularityidentificationalgorithmsandparametersinphasemappingduringhumanatrialfibrillation
AT dastagirnawshin standardizingsingleframephasesingularityidentificationalgorithmsandparametersinphasemappingduringhumanatrialfibrillation
AT guillemmarias standardizingsingleframephasesingularityidentificationalgorithmsandparametersinphasemappingduringhumanatrialfibrillation
AT salinetjoao standardizingsingleframephasesingularityidentificationalgorithmsandparametersinphasemappingduringhumanatrialfibrillation
AT chugavins standardizingsingleframephasesingularityidentificationalgorithmsandparametersinphasemappingduringhumanatrialfibrillation
AT staffordpeterj standardizingsingleframephasesingularityidentificationalgorithmsandparametersinphasemappingduringhumanatrialfibrillation
AT schlindweinfernandos standardizingsingleframephasesingularityidentificationalgorithmsandparametersinphasemappingduringhumanatrialfibrillation
AT nggandre standardizingsingleframephasesingularityidentificationalgorithmsandparametersinphasemappingduringhumanatrialfibrillation