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Knot selection in sparse Gaussian processes with a variational objective function
Sparse, knot‐based Gaussian processes have enjoyed considerable success as scalable approximations of full Gaussian processes. Certain sparse models can be derived through specific variational approximations to the true posterior, and knots can be selected to minimize the Kullback‐Leibler divergence...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Wiley Subscription Services, Inc., A Wiley Company
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7386924/ https://www.ncbi.nlm.nih.gov/pubmed/32742538 http://dx.doi.org/10.1002/sam.11459 |
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author | Garton, Nathaniel Niemi, Jarad Carriquiry, Alicia |
author_facet | Garton, Nathaniel Niemi, Jarad Carriquiry, Alicia |
author_sort | Garton, Nathaniel |
collection | PubMed |
description | Sparse, knot‐based Gaussian processes have enjoyed considerable success as scalable approximations of full Gaussian processes. Certain sparse models can be derived through specific variational approximations to the true posterior, and knots can be selected to minimize the Kullback‐Leibler divergence between the approximate and true posterior. While this has been a successful approach, simultaneous optimization of knots can be slow due to the number of parameters being optimized. Furthermore, there have been few proposed methods for selecting the number of knots, and no experimental results exist in the literature. We propose using a one‐at‐a‐time knot selection algorithm based on Bayesian optimization to select the number and locations of knots. We showcase the competitive performance of this method relative to optimization of knots simultaneously on three benchmark datasets, but at a fraction of the computational cost. |
format | Online Article Text |
id | pubmed-7386924 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Wiley Subscription Services, Inc., A Wiley Company |
record_format | MEDLINE/PubMed |
spelling | pubmed-73869242020-07-30 Knot selection in sparse Gaussian processes with a variational objective function Garton, Nathaniel Niemi, Jarad Carriquiry, Alicia Stat Anal Data Min Research Articles Sparse, knot‐based Gaussian processes have enjoyed considerable success as scalable approximations of full Gaussian processes. Certain sparse models can be derived through specific variational approximations to the true posterior, and knots can be selected to minimize the Kullback‐Leibler divergence between the approximate and true posterior. While this has been a successful approach, simultaneous optimization of knots can be slow due to the number of parameters being optimized. Furthermore, there have been few proposed methods for selecting the number of knots, and no experimental results exist in the literature. We propose using a one‐at‐a‐time knot selection algorithm based on Bayesian optimization to select the number and locations of knots. We showcase the competitive performance of this method relative to optimization of knots simultaneously on three benchmark datasets, but at a fraction of the computational cost. Wiley Subscription Services, Inc., A Wiley Company 2020-04-20 2020-08 /pmc/articles/PMC7386924/ /pubmed/32742538 http://dx.doi.org/10.1002/sam.11459 Text en © 2020 The Authors. Statistical Analysis and Data Mining published by Wiley Periodicals LLC This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Articles Garton, Nathaniel Niemi, Jarad Carriquiry, Alicia Knot selection in sparse Gaussian processes with a variational objective function |
title | Knot selection in sparse Gaussian processes with a variational objective function |
title_full | Knot selection in sparse Gaussian processes with a variational objective function |
title_fullStr | Knot selection in sparse Gaussian processes with a variational objective function |
title_full_unstemmed | Knot selection in sparse Gaussian processes with a variational objective function |
title_short | Knot selection in sparse Gaussian processes with a variational objective function |
title_sort | knot selection in sparse gaussian processes with a variational objective function |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7386924/ https://www.ncbi.nlm.nih.gov/pubmed/32742538 http://dx.doi.org/10.1002/sam.11459 |
work_keys_str_mv | AT gartonnathaniel knotselectioninsparsegaussianprocesseswithavariationalobjectivefunction AT niemijarad knotselectioninsparsegaussianprocesseswithavariationalobjectivefunction AT carriquiryalicia knotselectioninsparsegaussianprocesseswithavariationalobjectivefunction |