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Knot selection in sparse Gaussian processes with a variational objective function

Sparse, knot‐based Gaussian processes have enjoyed considerable success as scalable approximations of full Gaussian processes. Certain sparse models can be derived through specific variational approximations to the true posterior, and knots can be selected to minimize the Kullback‐Leibler divergence...

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Detalles Bibliográficos
Autores principales: Garton, Nathaniel, Niemi, Jarad, Carriquiry, Alicia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Wiley Subscription Services, Inc., A Wiley Company 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7386924/
https://www.ncbi.nlm.nih.gov/pubmed/32742538
http://dx.doi.org/10.1002/sam.11459
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author Garton, Nathaniel
Niemi, Jarad
Carriquiry, Alicia
author_facet Garton, Nathaniel
Niemi, Jarad
Carriquiry, Alicia
author_sort Garton, Nathaniel
collection PubMed
description Sparse, knot‐based Gaussian processes have enjoyed considerable success as scalable approximations of full Gaussian processes. Certain sparse models can be derived through specific variational approximations to the true posterior, and knots can be selected to minimize the Kullback‐Leibler divergence between the approximate and true posterior. While this has been a successful approach, simultaneous optimization of knots can be slow due to the number of parameters being optimized. Furthermore, there have been few proposed methods for selecting the number of knots, and no experimental results exist in the literature. We propose using a one‐at‐a‐time knot selection algorithm based on Bayesian optimization to select the number and locations of knots. We showcase the competitive performance of this method relative to optimization of knots simultaneously on three benchmark datasets, but at a fraction of the computational cost.
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spelling pubmed-73869242020-07-30 Knot selection in sparse Gaussian processes with a variational objective function Garton, Nathaniel Niemi, Jarad Carriquiry, Alicia Stat Anal Data Min Research Articles Sparse, knot‐based Gaussian processes have enjoyed considerable success as scalable approximations of full Gaussian processes. Certain sparse models can be derived through specific variational approximations to the true posterior, and knots can be selected to minimize the Kullback‐Leibler divergence between the approximate and true posterior. While this has been a successful approach, simultaneous optimization of knots can be slow due to the number of parameters being optimized. Furthermore, there have been few proposed methods for selecting the number of knots, and no experimental results exist in the literature. We propose using a one‐at‐a‐time knot selection algorithm based on Bayesian optimization to select the number and locations of knots. We showcase the competitive performance of this method relative to optimization of knots simultaneously on three benchmark datasets, but at a fraction of the computational cost. Wiley Subscription Services, Inc., A Wiley Company 2020-04-20 2020-08 /pmc/articles/PMC7386924/ /pubmed/32742538 http://dx.doi.org/10.1002/sam.11459 Text en © 2020 The Authors. Statistical Analysis and Data Mining published by Wiley Periodicals LLC This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Garton, Nathaniel
Niemi, Jarad
Carriquiry, Alicia
Knot selection in sparse Gaussian processes with a variational objective function
title Knot selection in sparse Gaussian processes with a variational objective function
title_full Knot selection in sparse Gaussian processes with a variational objective function
title_fullStr Knot selection in sparse Gaussian processes with a variational objective function
title_full_unstemmed Knot selection in sparse Gaussian processes with a variational objective function
title_short Knot selection in sparse Gaussian processes with a variational objective function
title_sort knot selection in sparse gaussian processes with a variational objective function
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7386924/
https://www.ncbi.nlm.nih.gov/pubmed/32742538
http://dx.doi.org/10.1002/sam.11459
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