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Comparison of Whole Genome (wg-) and Core Genome (cg-) MLST (BioNumerics(TM)) Versus SNP Variant Calling for Epidemiological Investigation of Pseudomonas aeruginosa
Whole genome sequencing (WGS) is increasingly used for epidemiological investigations of pathogens. While SNP variant calling is currently considered as the most suitable method, the choice of a representative reference genome and the isolate dependency of results limit standardization and affect re...
Autores principales: | Blanc, Dominique S., Magalhães, Bárbara, Koenig, Isabelle, Senn, Laurence, Grandbastien, Bruno |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7387498/ https://www.ncbi.nlm.nih.gov/pubmed/32793169 http://dx.doi.org/10.3389/fmicb.2020.01729 |
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