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Microscale thermophoresis as a powerful tool for screening glycosyltransferases involved in cell wall biosynthesis
BACKGROUND: Identification and characterization of key enzymes associated with cell wall biosynthesis and modification is fundamental to gain insights into cell wall dynamics. However, it is a challenge that activity assays of glycosyltransferases are very low throughput and acceptor substrates are...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7389378/ https://www.ncbi.nlm.nih.gov/pubmed/32742297 http://dx.doi.org/10.1186/s13007-020-00641-1 |
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author | Shao, Wanchen Sharma, Rita Clausen, Mads H. Scheller, Henrik V. |
author_facet | Shao, Wanchen Sharma, Rita Clausen, Mads H. Scheller, Henrik V. |
author_sort | Shao, Wanchen |
collection | PubMed |
description | BACKGROUND: Identification and characterization of key enzymes associated with cell wall biosynthesis and modification is fundamental to gain insights into cell wall dynamics. However, it is a challenge that activity assays of glycosyltransferases are very low throughput and acceptor substrates are generally not available. RESULTS: We optimized and validated microscale thermophoresis (MST) to achieve high throughput screening for glycosyltransferase substrates. MST is a powerful method for the quantitative analysis of protein–ligand interactions with low sample consumption. The technique is based on the motion of molecules along local temperature gradients, measured by fluorescence changes. We expressed glycosyltransferases as YFP-fusion proteins in tobacco and optimized the MST method to allow the determination of substrate binding affinity without purification of the target protein from the cell lysate. The application of this MST method to the β-1,4-galactosyltransferase AtGALS1 validated the capability to screen both nucleotide-sugar donor substrates and acceptor substrates. We also expanded the application to members of glycosyltransferase family GT61 in sorghum for substrate screening and function prediction. CONCLUSIONS: This method is rapid and sensitive to allow determination of both donor and acceptor substrates of glycosyltransferases. MST enables high throughput screening of glycosyltransferases for likely substrates, which will narrow down their in vivo function and help to select candidates for further studies. Additionally, this method gives insight into biochemical mechanism of glycosyltransferase function. |
format | Online Article Text |
id | pubmed-7389378 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-73893782020-07-31 Microscale thermophoresis as a powerful tool for screening glycosyltransferases involved in cell wall biosynthesis Shao, Wanchen Sharma, Rita Clausen, Mads H. Scheller, Henrik V. Plant Methods Methodology BACKGROUND: Identification and characterization of key enzymes associated with cell wall biosynthesis and modification is fundamental to gain insights into cell wall dynamics. However, it is a challenge that activity assays of glycosyltransferases are very low throughput and acceptor substrates are generally not available. RESULTS: We optimized and validated microscale thermophoresis (MST) to achieve high throughput screening for glycosyltransferase substrates. MST is a powerful method for the quantitative analysis of protein–ligand interactions with low sample consumption. The technique is based on the motion of molecules along local temperature gradients, measured by fluorescence changes. We expressed glycosyltransferases as YFP-fusion proteins in tobacco and optimized the MST method to allow the determination of substrate binding affinity without purification of the target protein from the cell lysate. The application of this MST method to the β-1,4-galactosyltransferase AtGALS1 validated the capability to screen both nucleotide-sugar donor substrates and acceptor substrates. We also expanded the application to members of glycosyltransferase family GT61 in sorghum for substrate screening and function prediction. CONCLUSIONS: This method is rapid and sensitive to allow determination of both donor and acceptor substrates of glycosyltransferases. MST enables high throughput screening of glycosyltransferases for likely substrates, which will narrow down their in vivo function and help to select candidates for further studies. Additionally, this method gives insight into biochemical mechanism of glycosyltransferase function. BioMed Central 2020-07-28 /pmc/articles/PMC7389378/ /pubmed/32742297 http://dx.doi.org/10.1186/s13007-020-00641-1 Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Methodology Shao, Wanchen Sharma, Rita Clausen, Mads H. Scheller, Henrik V. Microscale thermophoresis as a powerful tool for screening glycosyltransferases involved in cell wall biosynthesis |
title | Microscale thermophoresis as a powerful tool for screening glycosyltransferases involved in cell wall biosynthesis |
title_full | Microscale thermophoresis as a powerful tool for screening glycosyltransferases involved in cell wall biosynthesis |
title_fullStr | Microscale thermophoresis as a powerful tool for screening glycosyltransferases involved in cell wall biosynthesis |
title_full_unstemmed | Microscale thermophoresis as a powerful tool for screening glycosyltransferases involved in cell wall biosynthesis |
title_short | Microscale thermophoresis as a powerful tool for screening glycosyltransferases involved in cell wall biosynthesis |
title_sort | microscale thermophoresis as a powerful tool for screening glycosyltransferases involved in cell wall biosynthesis |
topic | Methodology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7389378/ https://www.ncbi.nlm.nih.gov/pubmed/32742297 http://dx.doi.org/10.1186/s13007-020-00641-1 |
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