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Identification of a Recurrence Signature and Validation of Cell Infiltration Level of Thyroid Cancer Microenvironment
Though many patients with thyroid cancer may be indolent, there are still about 50% lymph node metastases and 20% the recurrence rates. There is still no ideal method to predict its relapse. In this study, we analyzed the gene transcriptome profiles of eight Gene Expression Omnibus (GEO), and next s...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7390823/ https://www.ncbi.nlm.nih.gov/pubmed/32793117 http://dx.doi.org/10.3389/fendo.2020.00467 |
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author | Zhang, Liang Wang, Ying Li, Xiaobo Wang, Yang Wu, Kaile Wu, Jing Liu, Yehai |
author_facet | Zhang, Liang Wang, Ying Li, Xiaobo Wang, Yang Wu, Kaile Wu, Jing Liu, Yehai |
author_sort | Zhang, Liang |
collection | PubMed |
description | Though many patients with thyroid cancer may be indolent, there are still about 50% lymph node metastases and 20% the recurrence rates. There is still no ideal method to predict its relapse. In this study, we analyzed the gene transcriptome profiles of eight Gene Expression Omnibus (GEO), and next screened 77 commonly differential expressed genes. Next, Least Absolute Shrinkage and Selection Operator (LASSO) regression model was performed and seven genes (i.e., FN1, PKIA, TMEM47, FXYD6, SDC2, CD44, and GGCT) were then identified, which is highly associated with recurrence data from the Cancer Genome Atlas (TCGA) database. These patients were then divided into low and high-risk groups with specific risk-score formula. Univariate and multivariate Cox regression further revealed that the 7-mRNA signature plays a functional causative role independent of clinicopathological characteristics. The 7-mRNA-signature integrated nomogram showed better discrimination, and decision curve analysis demonstrated that it is clinically useful. Besides, patient with lower risk score shows a relatively lower level of activated dendritic cells (DCs), resting DCs, regulatory T cells and γδT cells, and process of DCs apoptotic. In conclusion, our present immune-related classifier could produce a potential tool for predicting early-relapse. |
format | Online Article Text |
id | pubmed-7390823 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-73908232020-08-12 Identification of a Recurrence Signature and Validation of Cell Infiltration Level of Thyroid Cancer Microenvironment Zhang, Liang Wang, Ying Li, Xiaobo Wang, Yang Wu, Kaile Wu, Jing Liu, Yehai Front Endocrinol (Lausanne) Endocrinology Though many patients with thyroid cancer may be indolent, there are still about 50% lymph node metastases and 20% the recurrence rates. There is still no ideal method to predict its relapse. In this study, we analyzed the gene transcriptome profiles of eight Gene Expression Omnibus (GEO), and next screened 77 commonly differential expressed genes. Next, Least Absolute Shrinkage and Selection Operator (LASSO) regression model was performed and seven genes (i.e., FN1, PKIA, TMEM47, FXYD6, SDC2, CD44, and GGCT) were then identified, which is highly associated with recurrence data from the Cancer Genome Atlas (TCGA) database. These patients were then divided into low and high-risk groups with specific risk-score formula. Univariate and multivariate Cox regression further revealed that the 7-mRNA signature plays a functional causative role independent of clinicopathological characteristics. The 7-mRNA-signature integrated nomogram showed better discrimination, and decision curve analysis demonstrated that it is clinically useful. Besides, patient with lower risk score shows a relatively lower level of activated dendritic cells (DCs), resting DCs, regulatory T cells and γδT cells, and process of DCs apoptotic. In conclusion, our present immune-related classifier could produce a potential tool for predicting early-relapse. Frontiers Media S.A. 2020-07-23 /pmc/articles/PMC7390823/ /pubmed/32793117 http://dx.doi.org/10.3389/fendo.2020.00467 Text en Copyright © 2020 Zhang, Wang, Li, Wang, Wu, Wu and Liu. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Endocrinology Zhang, Liang Wang, Ying Li, Xiaobo Wang, Yang Wu, Kaile Wu, Jing Liu, Yehai Identification of a Recurrence Signature and Validation of Cell Infiltration Level of Thyroid Cancer Microenvironment |
title | Identification of a Recurrence Signature and Validation of Cell Infiltration Level of Thyroid Cancer Microenvironment |
title_full | Identification of a Recurrence Signature and Validation of Cell Infiltration Level of Thyroid Cancer Microenvironment |
title_fullStr | Identification of a Recurrence Signature and Validation of Cell Infiltration Level of Thyroid Cancer Microenvironment |
title_full_unstemmed | Identification of a Recurrence Signature and Validation of Cell Infiltration Level of Thyroid Cancer Microenvironment |
title_short | Identification of a Recurrence Signature and Validation of Cell Infiltration Level of Thyroid Cancer Microenvironment |
title_sort | identification of a recurrence signature and validation of cell infiltration level of thyroid cancer microenvironment |
topic | Endocrinology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7390823/ https://www.ncbi.nlm.nih.gov/pubmed/32793117 http://dx.doi.org/10.3389/fendo.2020.00467 |
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