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Radiomics feature reproducibility under inter-rater variability in segmentations of CT images

Identifying image features that are robust with respect to segmentation variability is a tough challenge in radiomics. So far, this problem has mainly been tackled in test–retest analyses. In this work we analyse radiomics feature reproducibility in two phases: first with manual segmentations provid...

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Autores principales: Haarburger, Christoph, Müller-Franzes, Gustav, Weninger, Leon, Kuhl, Christiane, Truhn, Daniel, Merhof, Dorit
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7391354/
https://www.ncbi.nlm.nih.gov/pubmed/32728098
http://dx.doi.org/10.1038/s41598-020-69534-6
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author Haarburger, Christoph
Müller-Franzes, Gustav
Weninger, Leon
Kuhl, Christiane
Truhn, Daniel
Merhof, Dorit
author_facet Haarburger, Christoph
Müller-Franzes, Gustav
Weninger, Leon
Kuhl, Christiane
Truhn, Daniel
Merhof, Dorit
author_sort Haarburger, Christoph
collection PubMed
description Identifying image features that are robust with respect to segmentation variability is a tough challenge in radiomics. So far, this problem has mainly been tackled in test–retest analyses. In this work we analyse radiomics feature reproducibility in two phases: first with manual segmentations provided by four expert readers and second with probabilistic automated segmentations using a recently developed neural network (PHiseg). We test feature reproducibility on three publicly available datasets of lung, kidney and liver lesions. We find consistent results both over manual and automated segmentations in all three datasets and show that there are subsets of radiomic features which are robust against segmentation variability and other radiomic features which are prone to poor reproducibility under differing segmentations. By providing a detailed analysis of robustness of the most common radiomics features across several datasets, we envision that more reliable and reproducible radiomic models can be built in the future based on this work.
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spelling pubmed-73913542020-07-31 Radiomics feature reproducibility under inter-rater variability in segmentations of CT images Haarburger, Christoph Müller-Franzes, Gustav Weninger, Leon Kuhl, Christiane Truhn, Daniel Merhof, Dorit Sci Rep Article Identifying image features that are robust with respect to segmentation variability is a tough challenge in radiomics. So far, this problem has mainly been tackled in test–retest analyses. In this work we analyse radiomics feature reproducibility in two phases: first with manual segmentations provided by four expert readers and second with probabilistic automated segmentations using a recently developed neural network (PHiseg). We test feature reproducibility on three publicly available datasets of lung, kidney and liver lesions. We find consistent results both over manual and automated segmentations in all three datasets and show that there are subsets of radiomic features which are robust against segmentation variability and other radiomic features which are prone to poor reproducibility under differing segmentations. By providing a detailed analysis of robustness of the most common radiomics features across several datasets, we envision that more reliable and reproducible radiomic models can be built in the future based on this work. Nature Publishing Group UK 2020-07-29 /pmc/articles/PMC7391354/ /pubmed/32728098 http://dx.doi.org/10.1038/s41598-020-69534-6 Text en © The Author(s) 2020, corrected publication 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Haarburger, Christoph
Müller-Franzes, Gustav
Weninger, Leon
Kuhl, Christiane
Truhn, Daniel
Merhof, Dorit
Radiomics feature reproducibility under inter-rater variability in segmentations of CT images
title Radiomics feature reproducibility under inter-rater variability in segmentations of CT images
title_full Radiomics feature reproducibility under inter-rater variability in segmentations of CT images
title_fullStr Radiomics feature reproducibility under inter-rater variability in segmentations of CT images
title_full_unstemmed Radiomics feature reproducibility under inter-rater variability in segmentations of CT images
title_short Radiomics feature reproducibility under inter-rater variability in segmentations of CT images
title_sort radiomics feature reproducibility under inter-rater variability in segmentations of ct images
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7391354/
https://www.ncbi.nlm.nih.gov/pubmed/32728098
http://dx.doi.org/10.1038/s41598-020-69534-6
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