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Radiomics feature reproducibility under inter-rater variability in segmentations of CT images
Identifying image features that are robust with respect to segmentation variability is a tough challenge in radiomics. So far, this problem has mainly been tackled in test–retest analyses. In this work we analyse radiomics feature reproducibility in two phases: first with manual segmentations provid...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7391354/ https://www.ncbi.nlm.nih.gov/pubmed/32728098 http://dx.doi.org/10.1038/s41598-020-69534-6 |
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author | Haarburger, Christoph Müller-Franzes, Gustav Weninger, Leon Kuhl, Christiane Truhn, Daniel Merhof, Dorit |
author_facet | Haarburger, Christoph Müller-Franzes, Gustav Weninger, Leon Kuhl, Christiane Truhn, Daniel Merhof, Dorit |
author_sort | Haarburger, Christoph |
collection | PubMed |
description | Identifying image features that are robust with respect to segmentation variability is a tough challenge in radiomics. So far, this problem has mainly been tackled in test–retest analyses. In this work we analyse radiomics feature reproducibility in two phases: first with manual segmentations provided by four expert readers and second with probabilistic automated segmentations using a recently developed neural network (PHiseg). We test feature reproducibility on three publicly available datasets of lung, kidney and liver lesions. We find consistent results both over manual and automated segmentations in all three datasets and show that there are subsets of radiomic features which are robust against segmentation variability and other radiomic features which are prone to poor reproducibility under differing segmentations. By providing a detailed analysis of robustness of the most common radiomics features across several datasets, we envision that more reliable and reproducible radiomic models can be built in the future based on this work. |
format | Online Article Text |
id | pubmed-7391354 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-73913542020-07-31 Radiomics feature reproducibility under inter-rater variability in segmentations of CT images Haarburger, Christoph Müller-Franzes, Gustav Weninger, Leon Kuhl, Christiane Truhn, Daniel Merhof, Dorit Sci Rep Article Identifying image features that are robust with respect to segmentation variability is a tough challenge in radiomics. So far, this problem has mainly been tackled in test–retest analyses. In this work we analyse radiomics feature reproducibility in two phases: first with manual segmentations provided by four expert readers and second with probabilistic automated segmentations using a recently developed neural network (PHiseg). We test feature reproducibility on three publicly available datasets of lung, kidney and liver lesions. We find consistent results both over manual and automated segmentations in all three datasets and show that there are subsets of radiomic features which are robust against segmentation variability and other radiomic features which are prone to poor reproducibility under differing segmentations. By providing a detailed analysis of robustness of the most common radiomics features across several datasets, we envision that more reliable and reproducible radiomic models can be built in the future based on this work. Nature Publishing Group UK 2020-07-29 /pmc/articles/PMC7391354/ /pubmed/32728098 http://dx.doi.org/10.1038/s41598-020-69534-6 Text en © The Author(s) 2020, corrected publication 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Haarburger, Christoph Müller-Franzes, Gustav Weninger, Leon Kuhl, Christiane Truhn, Daniel Merhof, Dorit Radiomics feature reproducibility under inter-rater variability in segmentations of CT images |
title | Radiomics feature reproducibility under inter-rater variability in segmentations of CT images |
title_full | Radiomics feature reproducibility under inter-rater variability in segmentations of CT images |
title_fullStr | Radiomics feature reproducibility under inter-rater variability in segmentations of CT images |
title_full_unstemmed | Radiomics feature reproducibility under inter-rater variability in segmentations of CT images |
title_short | Radiomics feature reproducibility under inter-rater variability in segmentations of CT images |
title_sort | radiomics feature reproducibility under inter-rater variability in segmentations of ct images |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7391354/ https://www.ncbi.nlm.nih.gov/pubmed/32728098 http://dx.doi.org/10.1038/s41598-020-69534-6 |
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