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Genome sequencing and functional characterization of a Dictyopanus pusillus fungal enzymatic extract offers a promising alternative for lignocellulose pretreatment of oil palm residues

The pretreatment of biomass remains a critical requirement for bio-renewable fuel production from lignocellulose. Although current processes primarily involve chemical and physical approaches, the biological breakdown of lignin using enzymes and microorganisms is quickly becoming an interesting eco-...

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Autores principales: Rueda, Andrés M., López de los Santos, Yossef, Vincent, Antony T., Létourneau, Myriam, Hernández, Inés, Sánchez, Clara I., Molina V., Daniel, Ospina, Sonia A., Veyrier, Frédéric J., Doucet, Nicolas
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7392265/
https://www.ncbi.nlm.nih.gov/pubmed/32730337
http://dx.doi.org/10.1371/journal.pone.0227529
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author Rueda, Andrés M.
López de los Santos, Yossef
Vincent, Antony T.
Létourneau, Myriam
Hernández, Inés
Sánchez, Clara I.
Molina V., Daniel
Ospina, Sonia A.
Veyrier, Frédéric J.
Doucet, Nicolas
author_facet Rueda, Andrés M.
López de los Santos, Yossef
Vincent, Antony T.
Létourneau, Myriam
Hernández, Inés
Sánchez, Clara I.
Molina V., Daniel
Ospina, Sonia A.
Veyrier, Frédéric J.
Doucet, Nicolas
author_sort Rueda, Andrés M.
collection PubMed
description The pretreatment of biomass remains a critical requirement for bio-renewable fuel production from lignocellulose. Although current processes primarily involve chemical and physical approaches, the biological breakdown of lignin using enzymes and microorganisms is quickly becoming an interesting eco-friendly alternative to classical processes. As a result, bioprospection of wild fungi from naturally occurring lignin-rich sources remains a suitable method to uncover and isolate new species exhibiting ligninolytic activity. In this study, wild species of white rot fungi were collected from Colombian forests based on their natural wood decay ability and high capacity to secrete oxidoreductases with high affinity for phenolic polymers such as lignin. Based on high activity obtained from solid-state fermentation using a lignocellulose source from oil palm as matrix, we describe the isolation and whole-genome sequencing of Dictyopanus pusillus, a wild basidiomycete fungus exhibiting ABTS oxidation as an indication of laccase activity. Functional characterization of a crude enzymatic extract identified laccase activity as the main enzymatic contributor to fungal extracts, an observation supported by the identification of 13 putative genes encoding for homologous laccases in the genome. To the best of our knowledge, this represents the first report of an enzymatic extract exhibiting laccase activity in the Dictyopanus genera, offering means to exploit this species and its enzymes for the delignification process of lignocellulosic by-products from oil palm.
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spelling pubmed-73922652020-08-05 Genome sequencing and functional characterization of a Dictyopanus pusillus fungal enzymatic extract offers a promising alternative for lignocellulose pretreatment of oil palm residues Rueda, Andrés M. López de los Santos, Yossef Vincent, Antony T. Létourneau, Myriam Hernández, Inés Sánchez, Clara I. Molina V., Daniel Ospina, Sonia A. Veyrier, Frédéric J. Doucet, Nicolas PLoS One Research Article The pretreatment of biomass remains a critical requirement for bio-renewable fuel production from lignocellulose. Although current processes primarily involve chemical and physical approaches, the biological breakdown of lignin using enzymes and microorganisms is quickly becoming an interesting eco-friendly alternative to classical processes. As a result, bioprospection of wild fungi from naturally occurring lignin-rich sources remains a suitable method to uncover and isolate new species exhibiting ligninolytic activity. In this study, wild species of white rot fungi were collected from Colombian forests based on their natural wood decay ability and high capacity to secrete oxidoreductases with high affinity for phenolic polymers such as lignin. Based on high activity obtained from solid-state fermentation using a lignocellulose source from oil palm as matrix, we describe the isolation and whole-genome sequencing of Dictyopanus pusillus, a wild basidiomycete fungus exhibiting ABTS oxidation as an indication of laccase activity. Functional characterization of a crude enzymatic extract identified laccase activity as the main enzymatic contributor to fungal extracts, an observation supported by the identification of 13 putative genes encoding for homologous laccases in the genome. To the best of our knowledge, this represents the first report of an enzymatic extract exhibiting laccase activity in the Dictyopanus genera, offering means to exploit this species and its enzymes for the delignification process of lignocellulosic by-products from oil palm. Public Library of Science 2020-07-30 /pmc/articles/PMC7392265/ /pubmed/32730337 http://dx.doi.org/10.1371/journal.pone.0227529 Text en © 2020 Rueda et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Rueda, Andrés M.
López de los Santos, Yossef
Vincent, Antony T.
Létourneau, Myriam
Hernández, Inés
Sánchez, Clara I.
Molina V., Daniel
Ospina, Sonia A.
Veyrier, Frédéric J.
Doucet, Nicolas
Genome sequencing and functional characterization of a Dictyopanus pusillus fungal enzymatic extract offers a promising alternative for lignocellulose pretreatment of oil palm residues
title Genome sequencing and functional characterization of a Dictyopanus pusillus fungal enzymatic extract offers a promising alternative for lignocellulose pretreatment of oil palm residues
title_full Genome sequencing and functional characterization of a Dictyopanus pusillus fungal enzymatic extract offers a promising alternative for lignocellulose pretreatment of oil palm residues
title_fullStr Genome sequencing and functional characterization of a Dictyopanus pusillus fungal enzymatic extract offers a promising alternative for lignocellulose pretreatment of oil palm residues
title_full_unstemmed Genome sequencing and functional characterization of a Dictyopanus pusillus fungal enzymatic extract offers a promising alternative for lignocellulose pretreatment of oil palm residues
title_short Genome sequencing and functional characterization of a Dictyopanus pusillus fungal enzymatic extract offers a promising alternative for lignocellulose pretreatment of oil palm residues
title_sort genome sequencing and functional characterization of a dictyopanus pusillus fungal enzymatic extract offers a promising alternative for lignocellulose pretreatment of oil palm residues
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7392265/
https://www.ncbi.nlm.nih.gov/pubmed/32730337
http://dx.doi.org/10.1371/journal.pone.0227529
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