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A new clinical prognostic nomogram for liver cancer based on immune score

BACKGROUND: Increased attention is being paid to the relationship between the immune status of the tumor microenvironment and tumor prognosis. The application of immune scoring in evaluating the clinical prognosis of liver cancer patients has not yet been explored. This study sought to clarify the a...

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Autores principales: Shen, Qinyan, Hu, Guinv, Wu, JinZhong, Lv, Liting
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7392298/
https://www.ncbi.nlm.nih.gov/pubmed/32730361
http://dx.doi.org/10.1371/journal.pone.0236622
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author Shen, Qinyan
Hu, Guinv
Wu, JinZhong
Lv, Liting
author_facet Shen, Qinyan
Hu, Guinv
Wu, JinZhong
Lv, Liting
author_sort Shen, Qinyan
collection PubMed
description BACKGROUND: Increased attention is being paid to the relationship between the immune status of the tumor microenvironment and tumor prognosis. The application of immune scoring in evaluating the clinical prognosis of liver cancer patients has not yet been explored. This study sought to clarify the association between immune score and prognosis and construct a clinical nomogram to predict the survival of patients with liver cancer. METHODS: A total of 346 patients were included in our analysis datasets downloaded from The Cancer Genome Atlas (TCGA) dataset. A Cox proportional-hazards regression model was used to estimate the adjusted hazard ratios (HRs). A nomogram was built based on the results of multivariate analysis and was subjected to bootstrap internal validation. The predictive accuracy and discriminative ability were measured by the concordance index (C-index) and the calibration curve. Through the functional analysis of differential expression of genes with different immune scores, the target genes were screened out. RESULTS: In comparison with patients with low immune scores, those with intermediate and high immune scores had significantly improved survival time [HR and 95% confidence interval (CI): 0.54 (0.30–0.97) and 0.51 (0.27–0.97), respectively]. The C-index for survival time prediction was 0.66 (95% CI: 0.60–0.71). The calibration plot for the probability of survival at three or five years showed good agreement between prediction by the nomogram and actual observations. The top 10 hub genes were CXCL8(chemokine (C-X-C motif) ligand 8), SYK(spleen tyrosine kinase), CXCL12(chemokine (C-X-C motif) ligand 12), CXCL10 (chemokine (C-X-C motif) ligand10), CXCL1(chemokine (C-X-C motif) ligand1), CCL5(chemokine (C-C motif) ligand 5), CCL20(chemokine (C-C motif) ligand 20), LCK, CXCL11(chemokine (C-X-C motif) ligand 11), CCR5(chemokine (C-C motif) receptor 5). More importantly, we found that the high expression of CXCL8 and CXCL1 were related to the prognosis. CONCLUSIONS: High and/or intermediate immune scores are significantly correlated with better survival time in patients with liver cancer. Moreover, nomograms for predicting prognosis may help to estimate the survival of patients. We also propose that CXCL8 and CXCL1 may be a potential therapeutic target for liver cancer treatment.
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spelling pubmed-73922982020-08-05 A new clinical prognostic nomogram for liver cancer based on immune score Shen, Qinyan Hu, Guinv Wu, JinZhong Lv, Liting PLoS One Research Article BACKGROUND: Increased attention is being paid to the relationship between the immune status of the tumor microenvironment and tumor prognosis. The application of immune scoring in evaluating the clinical prognosis of liver cancer patients has not yet been explored. This study sought to clarify the association between immune score and prognosis and construct a clinical nomogram to predict the survival of patients with liver cancer. METHODS: A total of 346 patients were included in our analysis datasets downloaded from The Cancer Genome Atlas (TCGA) dataset. A Cox proportional-hazards regression model was used to estimate the adjusted hazard ratios (HRs). A nomogram was built based on the results of multivariate analysis and was subjected to bootstrap internal validation. The predictive accuracy and discriminative ability were measured by the concordance index (C-index) and the calibration curve. Through the functional analysis of differential expression of genes with different immune scores, the target genes were screened out. RESULTS: In comparison with patients with low immune scores, those with intermediate and high immune scores had significantly improved survival time [HR and 95% confidence interval (CI): 0.54 (0.30–0.97) and 0.51 (0.27–0.97), respectively]. The C-index for survival time prediction was 0.66 (95% CI: 0.60–0.71). The calibration plot for the probability of survival at three or five years showed good agreement between prediction by the nomogram and actual observations. The top 10 hub genes were CXCL8(chemokine (C-X-C motif) ligand 8), SYK(spleen tyrosine kinase), CXCL12(chemokine (C-X-C motif) ligand 12), CXCL10 (chemokine (C-X-C motif) ligand10), CXCL1(chemokine (C-X-C motif) ligand1), CCL5(chemokine (C-C motif) ligand 5), CCL20(chemokine (C-C motif) ligand 20), LCK, CXCL11(chemokine (C-X-C motif) ligand 11), CCR5(chemokine (C-C motif) receptor 5). More importantly, we found that the high expression of CXCL8 and CXCL1 were related to the prognosis. CONCLUSIONS: High and/or intermediate immune scores are significantly correlated with better survival time in patients with liver cancer. Moreover, nomograms for predicting prognosis may help to estimate the survival of patients. We also propose that CXCL8 and CXCL1 may be a potential therapeutic target for liver cancer treatment. Public Library of Science 2020-07-30 /pmc/articles/PMC7392298/ /pubmed/32730361 http://dx.doi.org/10.1371/journal.pone.0236622 Text en © 2020 Shen et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Shen, Qinyan
Hu, Guinv
Wu, JinZhong
Lv, Liting
A new clinical prognostic nomogram for liver cancer based on immune score
title A new clinical prognostic nomogram for liver cancer based on immune score
title_full A new clinical prognostic nomogram for liver cancer based on immune score
title_fullStr A new clinical prognostic nomogram for liver cancer based on immune score
title_full_unstemmed A new clinical prognostic nomogram for liver cancer based on immune score
title_short A new clinical prognostic nomogram for liver cancer based on immune score
title_sort new clinical prognostic nomogram for liver cancer based on immune score
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7392298/
https://www.ncbi.nlm.nih.gov/pubmed/32730361
http://dx.doi.org/10.1371/journal.pone.0236622
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