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Volumetric lung nodule segmentation using adaptive ROI with multi-view residual learning
Accurate quantification of pulmonary nodules can greatly assist the early diagnosis of lung cancer, enhancing patient survival possibilities. A number of nodule segmentation techniques, which either rely on a radiologist-provided 3-D volume of interest (VOI) or use the constant region of interests (...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7393083/ https://www.ncbi.nlm.nih.gov/pubmed/32732963 http://dx.doi.org/10.1038/s41598-020-69817-y |
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author | Usman, Muhammad Lee, Byoung-Dai Byon, Shi-Sub Kim, Sung-Hyun Lee, Byung-il Shin, Yeong-Gil |
author_facet | Usman, Muhammad Lee, Byoung-Dai Byon, Shi-Sub Kim, Sung-Hyun Lee, Byung-il Shin, Yeong-Gil |
author_sort | Usman, Muhammad |
collection | PubMed |
description | Accurate quantification of pulmonary nodules can greatly assist the early diagnosis of lung cancer, enhancing patient survival possibilities. A number of nodule segmentation techniques, which either rely on a radiologist-provided 3-D volume of interest (VOI) or use the constant region of interests (ROIs) for all the slices, are proposed; however, these techniques can only investigate the presence of nodule voxels within the given VOI. Such approaches restrain the solutions to freely investigate the nodule presence outside the given VOI and also include the redundant structures (non-nodule) into VOI, which limits the segmentation accuracy. In this work, a novel semi-automated approach for 3-D segmentation of lung nodule in computerized tomography scans, has been proposed. The technique is segregated into two stages. In the first stage, a 2-D ROI containing the nodule is provided as an input to perform a patch-wise exploration along the axial axis using a novel adaptive ROI algorithm. This strategy enables the dynamic selection of the ROI in the surrounding slices to investigate the presence of nodules using a Deep Residual U-Net architecture. This stage provides the initial estimation of the nodule utilized to extract the VOI. In the second stage, the extracted VOI is further explored along the coronal and sagittal axes, in patchwise fashion, with Residual U-Nets. All the estimated masks are then fed into a consensus module to produce a final volumetric segmentation of the nodule. The algorithm is rigorously evaluated on LIDC–IDRI dataset, which is the largest publicly available dataset. The proposed approach achieved the average dice score of 87.5%, which is significantly higher than the existing state-of-the-art techniques. |
format | Online Article Text |
id | pubmed-7393083 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-73930832020-08-03 Volumetric lung nodule segmentation using adaptive ROI with multi-view residual learning Usman, Muhammad Lee, Byoung-Dai Byon, Shi-Sub Kim, Sung-Hyun Lee, Byung-il Shin, Yeong-Gil Sci Rep Article Accurate quantification of pulmonary nodules can greatly assist the early diagnosis of lung cancer, enhancing patient survival possibilities. A number of nodule segmentation techniques, which either rely on a radiologist-provided 3-D volume of interest (VOI) or use the constant region of interests (ROIs) for all the slices, are proposed; however, these techniques can only investigate the presence of nodule voxels within the given VOI. Such approaches restrain the solutions to freely investigate the nodule presence outside the given VOI and also include the redundant structures (non-nodule) into VOI, which limits the segmentation accuracy. In this work, a novel semi-automated approach for 3-D segmentation of lung nodule in computerized tomography scans, has been proposed. The technique is segregated into two stages. In the first stage, a 2-D ROI containing the nodule is provided as an input to perform a patch-wise exploration along the axial axis using a novel adaptive ROI algorithm. This strategy enables the dynamic selection of the ROI in the surrounding slices to investigate the presence of nodules using a Deep Residual U-Net architecture. This stage provides the initial estimation of the nodule utilized to extract the VOI. In the second stage, the extracted VOI is further explored along the coronal and sagittal axes, in patchwise fashion, with Residual U-Nets. All the estimated masks are then fed into a consensus module to produce a final volumetric segmentation of the nodule. The algorithm is rigorously evaluated on LIDC–IDRI dataset, which is the largest publicly available dataset. The proposed approach achieved the average dice score of 87.5%, which is significantly higher than the existing state-of-the-art techniques. Nature Publishing Group UK 2020-07-30 /pmc/articles/PMC7393083/ /pubmed/32732963 http://dx.doi.org/10.1038/s41598-020-69817-y Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Usman, Muhammad Lee, Byoung-Dai Byon, Shi-Sub Kim, Sung-Hyun Lee, Byung-il Shin, Yeong-Gil Volumetric lung nodule segmentation using adaptive ROI with multi-view residual learning |
title | Volumetric lung nodule segmentation using adaptive ROI with multi-view residual learning |
title_full | Volumetric lung nodule segmentation using adaptive ROI with multi-view residual learning |
title_fullStr | Volumetric lung nodule segmentation using adaptive ROI with multi-view residual learning |
title_full_unstemmed | Volumetric lung nodule segmentation using adaptive ROI with multi-view residual learning |
title_short | Volumetric lung nodule segmentation using adaptive ROI with multi-view residual learning |
title_sort | volumetric lung nodule segmentation using adaptive roi with multi-view residual learning |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7393083/ https://www.ncbi.nlm.nih.gov/pubmed/32732963 http://dx.doi.org/10.1038/s41598-020-69817-y |
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