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Volumetric lung nodule segmentation using adaptive ROI with multi-view residual learning

Accurate quantification of pulmonary nodules can greatly assist the early diagnosis of lung cancer, enhancing patient survival possibilities. A number of nodule segmentation techniques, which either rely on a radiologist-provided 3-D volume of interest (VOI) or use the constant region of interests (...

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Autores principales: Usman, Muhammad, Lee, Byoung-Dai, Byon, Shi-Sub, Kim, Sung-Hyun, Lee, Byung-il, Shin, Yeong-Gil
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7393083/
https://www.ncbi.nlm.nih.gov/pubmed/32732963
http://dx.doi.org/10.1038/s41598-020-69817-y
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author Usman, Muhammad
Lee, Byoung-Dai
Byon, Shi-Sub
Kim, Sung-Hyun
Lee, Byung-il
Shin, Yeong-Gil
author_facet Usman, Muhammad
Lee, Byoung-Dai
Byon, Shi-Sub
Kim, Sung-Hyun
Lee, Byung-il
Shin, Yeong-Gil
author_sort Usman, Muhammad
collection PubMed
description Accurate quantification of pulmonary nodules can greatly assist the early diagnosis of lung cancer, enhancing patient survival possibilities. A number of nodule segmentation techniques, which either rely on a radiologist-provided 3-D volume of interest (VOI) or use the constant region of interests (ROIs) for all the slices, are proposed; however, these techniques can only investigate the presence of nodule voxels within the given VOI. Such approaches restrain the solutions to freely investigate the nodule presence outside the given VOI and also include the redundant structures (non-nodule) into VOI, which limits the segmentation accuracy. In this work, a novel semi-automated approach for 3-D segmentation of lung nodule in computerized tomography scans, has been proposed. The technique is segregated into two stages. In the first stage, a 2-D ROI containing the nodule is provided as an input to perform a patch-wise exploration along the axial axis using a novel adaptive ROI algorithm. This strategy enables the dynamic selection of the ROI in the surrounding slices to investigate the presence of nodules using a Deep Residual U-Net architecture. This stage provides the initial estimation of the nodule utilized to extract the VOI. In the second stage, the extracted VOI is further explored along the coronal and sagittal axes, in patchwise fashion, with Residual U-Nets. All the estimated masks are then fed into a consensus module to produce a final volumetric segmentation of the nodule. The algorithm is rigorously evaluated on LIDC–IDRI dataset, which is the largest publicly available dataset. The proposed approach achieved the average dice score of 87.5%, which is significantly higher than the existing state-of-the-art techniques.
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spelling pubmed-73930832020-08-03 Volumetric lung nodule segmentation using adaptive ROI with multi-view residual learning Usman, Muhammad Lee, Byoung-Dai Byon, Shi-Sub Kim, Sung-Hyun Lee, Byung-il Shin, Yeong-Gil Sci Rep Article Accurate quantification of pulmonary nodules can greatly assist the early diagnosis of lung cancer, enhancing patient survival possibilities. A number of nodule segmentation techniques, which either rely on a radiologist-provided 3-D volume of interest (VOI) or use the constant region of interests (ROIs) for all the slices, are proposed; however, these techniques can only investigate the presence of nodule voxels within the given VOI. Such approaches restrain the solutions to freely investigate the nodule presence outside the given VOI and also include the redundant structures (non-nodule) into VOI, which limits the segmentation accuracy. In this work, a novel semi-automated approach for 3-D segmentation of lung nodule in computerized tomography scans, has been proposed. The technique is segregated into two stages. In the first stage, a 2-D ROI containing the nodule is provided as an input to perform a patch-wise exploration along the axial axis using a novel adaptive ROI algorithm. This strategy enables the dynamic selection of the ROI in the surrounding slices to investigate the presence of nodules using a Deep Residual U-Net architecture. This stage provides the initial estimation of the nodule utilized to extract the VOI. In the second stage, the extracted VOI is further explored along the coronal and sagittal axes, in patchwise fashion, with Residual U-Nets. All the estimated masks are then fed into a consensus module to produce a final volumetric segmentation of the nodule. The algorithm is rigorously evaluated on LIDC–IDRI dataset, which is the largest publicly available dataset. The proposed approach achieved the average dice score of 87.5%, which is significantly higher than the existing state-of-the-art techniques. Nature Publishing Group UK 2020-07-30 /pmc/articles/PMC7393083/ /pubmed/32732963 http://dx.doi.org/10.1038/s41598-020-69817-y Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Usman, Muhammad
Lee, Byoung-Dai
Byon, Shi-Sub
Kim, Sung-Hyun
Lee, Byung-il
Shin, Yeong-Gil
Volumetric lung nodule segmentation using adaptive ROI with multi-view residual learning
title Volumetric lung nodule segmentation using adaptive ROI with multi-view residual learning
title_full Volumetric lung nodule segmentation using adaptive ROI with multi-view residual learning
title_fullStr Volumetric lung nodule segmentation using adaptive ROI with multi-view residual learning
title_full_unstemmed Volumetric lung nodule segmentation using adaptive ROI with multi-view residual learning
title_short Volumetric lung nodule segmentation using adaptive ROI with multi-view residual learning
title_sort volumetric lung nodule segmentation using adaptive roi with multi-view residual learning
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7393083/
https://www.ncbi.nlm.nih.gov/pubmed/32732963
http://dx.doi.org/10.1038/s41598-020-69817-y
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