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Identification of Immune-Related Prognostic Genes and LncRNAs Biomarkers Associated With Osteosarcoma Microenvironment

Osteosarcoma (OS) is the most common malignancy of the bone that occurs majorly in young people and adolescents. Although the survival of OS patients markedly improved by complete surgical resection and chemotherapy, the outcome is still poor in patients with recurrent and/or metastasized OS. Thus,...

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Autores principales: Zhang, Tao, Nie, Yingli, Xia, Haifa, Zhang, Yanbin, Cai, Kailin, Chen, Xiangdong, Li, Huili, Wang, Jiliang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7393189/
https://www.ncbi.nlm.nih.gov/pubmed/32793475
http://dx.doi.org/10.3389/fonc.2020.01109
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author Zhang, Tao
Nie, Yingli
Xia, Haifa
Zhang, Yanbin
Cai, Kailin
Chen, Xiangdong
Li, Huili
Wang, Jiliang
author_facet Zhang, Tao
Nie, Yingli
Xia, Haifa
Zhang, Yanbin
Cai, Kailin
Chen, Xiangdong
Li, Huili
Wang, Jiliang
author_sort Zhang, Tao
collection PubMed
description Osteosarcoma (OS) is the most common malignancy of the bone that occurs majorly in young people and adolescents. Although the survival of OS patients markedly improved by complete surgical resection and chemotherapy, the outcome is still poor in patients with recurrent and/or metastasized OS. Thus, identifying prognostic biomarkers that reflect the biological heterogeneity of OS could lead to better interventions for OS patients. Increasing studies have indicated the association between immune-related genes (IRGs) and cancer prognosis. In the present study, based on the data concerning OS obtained from TARGET (Therapeutically Applicable Research to Generate Effective Treatments) database, we constructed a classifier containing 12 immune-related (IR) long non-coding RNAs (lncRNAs) and 3 IRGs for predicting the prognosis of OS by using the least absolute shrinkage and selection operation Cox regression. Besides, based on the risk score calculated by the classifier, the samples were divided into high- and low-risk groups. We further investigated the tumor microenvironment of the OS samples by ESTIMATE and CIBERSORT algorithms between the two groups. Finally, we identified three small molecular drugs with potential therapeutic value for OS patients with high-risk score. Our results suggest that the IRGs and IR-lncRNAs–based classifier could be used as a reliable prognostic predictor for OS survival.
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spelling pubmed-73931892020-08-12 Identification of Immune-Related Prognostic Genes and LncRNAs Biomarkers Associated With Osteosarcoma Microenvironment Zhang, Tao Nie, Yingli Xia, Haifa Zhang, Yanbin Cai, Kailin Chen, Xiangdong Li, Huili Wang, Jiliang Front Oncol Oncology Osteosarcoma (OS) is the most common malignancy of the bone that occurs majorly in young people and adolescents. Although the survival of OS patients markedly improved by complete surgical resection and chemotherapy, the outcome is still poor in patients with recurrent and/or metastasized OS. Thus, identifying prognostic biomarkers that reflect the biological heterogeneity of OS could lead to better interventions for OS patients. Increasing studies have indicated the association between immune-related genes (IRGs) and cancer prognosis. In the present study, based on the data concerning OS obtained from TARGET (Therapeutically Applicable Research to Generate Effective Treatments) database, we constructed a classifier containing 12 immune-related (IR) long non-coding RNAs (lncRNAs) and 3 IRGs for predicting the prognosis of OS by using the least absolute shrinkage and selection operation Cox regression. Besides, based on the risk score calculated by the classifier, the samples were divided into high- and low-risk groups. We further investigated the tumor microenvironment of the OS samples by ESTIMATE and CIBERSORT algorithms between the two groups. Finally, we identified three small molecular drugs with potential therapeutic value for OS patients with high-risk score. Our results suggest that the IRGs and IR-lncRNAs–based classifier could be used as a reliable prognostic predictor for OS survival. Frontiers Media S.A. 2020-07-24 /pmc/articles/PMC7393189/ /pubmed/32793475 http://dx.doi.org/10.3389/fonc.2020.01109 Text en Copyright © 2020 Zhang, Nie, Xia, Zhang, Cai, Chen, Li and Wang. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Oncology
Zhang, Tao
Nie, Yingli
Xia, Haifa
Zhang, Yanbin
Cai, Kailin
Chen, Xiangdong
Li, Huili
Wang, Jiliang
Identification of Immune-Related Prognostic Genes and LncRNAs Biomarkers Associated With Osteosarcoma Microenvironment
title Identification of Immune-Related Prognostic Genes and LncRNAs Biomarkers Associated With Osteosarcoma Microenvironment
title_full Identification of Immune-Related Prognostic Genes and LncRNAs Biomarkers Associated With Osteosarcoma Microenvironment
title_fullStr Identification of Immune-Related Prognostic Genes and LncRNAs Biomarkers Associated With Osteosarcoma Microenvironment
title_full_unstemmed Identification of Immune-Related Prognostic Genes and LncRNAs Biomarkers Associated With Osteosarcoma Microenvironment
title_short Identification of Immune-Related Prognostic Genes and LncRNAs Biomarkers Associated With Osteosarcoma Microenvironment
title_sort identification of immune-related prognostic genes and lncrnas biomarkers associated with osteosarcoma microenvironment
topic Oncology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7393189/
https://www.ncbi.nlm.nih.gov/pubmed/32793475
http://dx.doi.org/10.3389/fonc.2020.01109
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