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Complete Genome of Roseobacter ponti DSM 106830(T)
Members of the Roseobacter group are known for their different ecologically relevant metabolic traits and high abundance in many marine environments. This includes traits like carbon monoxide oxidation, sulfur oxidation, nitrogen oxidation, DMSP demethylation, denitrification, and production of bioa...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7394491/ https://www.ncbi.nlm.nih.gov/pubmed/32658259 http://dx.doi.org/10.1093/gbe/evaa114 |
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author | Hollensteiner, Jacqueline Schneider, Dominik Poehlein, Anja Daniel, Rolf |
author_facet | Hollensteiner, Jacqueline Schneider, Dominik Poehlein, Anja Daniel, Rolf |
author_sort | Hollensteiner, Jacqueline |
collection | PubMed |
description | Members of the Roseobacter group are known for their different ecologically relevant metabolic traits and high abundance in many marine environments. This includes traits like carbon monoxide oxidation, sulfur oxidation, nitrogen oxidation, DMSP demethylation, denitrification, and production of bioactive compounds. Nevertheless, their role in the marine biogeochemical cycles remains to be elucidated. Roseobacter ponti DSM 106830(T), also designated strain MM-7(T) (=KCTC 52469(T) =NBRC 112431(T)), is a novel type strain of the Roseobacter group, which was proposed as new Roseobacter species. It was isolated from seawater of the Yellow Sea in South Korea. We report the complete genome sequence of R. ponti DSM 106830(T), which belongs to the family Rhodobacteraceae. The genome of R. ponti DSM 106830(T) comprises a single circular chromosome (3,861,689 bp) with a GC content of 60.52% and an additional circular plasmid (p1) of 100,942 bp with a GC content of 61.51%. The genome encodes 3,812 putative genes, including 3 rRNA, 42 tRNA, 1 tmRNA, and 3 ncRNA. The genome information was used to perform a phylogenetic analysis, which confirmed that the strain represents a new species. Moreover, the genome sequence enabled the investigation of the metabolic capabilities and versatility of R. ponti DSM 106830(T). Finally, it provided insight into the high niche adaptation potential of Roseobacter group members. |
format | Online Article Text |
id | pubmed-7394491 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-73944912020-08-04 Complete Genome of Roseobacter ponti DSM 106830(T) Hollensteiner, Jacqueline Schneider, Dominik Poehlein, Anja Daniel, Rolf Genome Biol Evol Genome Report Members of the Roseobacter group are known for their different ecologically relevant metabolic traits and high abundance in many marine environments. This includes traits like carbon monoxide oxidation, sulfur oxidation, nitrogen oxidation, DMSP demethylation, denitrification, and production of bioactive compounds. Nevertheless, their role in the marine biogeochemical cycles remains to be elucidated. Roseobacter ponti DSM 106830(T), also designated strain MM-7(T) (=KCTC 52469(T) =NBRC 112431(T)), is a novel type strain of the Roseobacter group, which was proposed as new Roseobacter species. It was isolated from seawater of the Yellow Sea in South Korea. We report the complete genome sequence of R. ponti DSM 106830(T), which belongs to the family Rhodobacteraceae. The genome of R. ponti DSM 106830(T) comprises a single circular chromosome (3,861,689 bp) with a GC content of 60.52% and an additional circular plasmid (p1) of 100,942 bp with a GC content of 61.51%. The genome encodes 3,812 putative genes, including 3 rRNA, 42 tRNA, 1 tmRNA, and 3 ncRNA. The genome information was used to perform a phylogenetic analysis, which confirmed that the strain represents a new species. Moreover, the genome sequence enabled the investigation of the metabolic capabilities and versatility of R. ponti DSM 106830(T). Finally, it provided insight into the high niche adaptation potential of Roseobacter group members. Oxford University Press 2020-07-13 /pmc/articles/PMC7394491/ /pubmed/32658259 http://dx.doi.org/10.1093/gbe/evaa114 Text en © The Author(s) 2020. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Genome Report Hollensteiner, Jacqueline Schneider, Dominik Poehlein, Anja Daniel, Rolf Complete Genome of Roseobacter ponti DSM 106830(T) |
title | Complete Genome of Roseobacter ponti DSM 106830(T) |
title_full | Complete Genome of Roseobacter ponti DSM 106830(T) |
title_fullStr | Complete Genome of Roseobacter ponti DSM 106830(T) |
title_full_unstemmed | Complete Genome of Roseobacter ponti DSM 106830(T) |
title_short | Complete Genome of Roseobacter ponti DSM 106830(T) |
title_sort | complete genome of roseobacter ponti dsm 106830(t) |
topic | Genome Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7394491/ https://www.ncbi.nlm.nih.gov/pubmed/32658259 http://dx.doi.org/10.1093/gbe/evaa114 |
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