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Prognostic Value and Potential Role of Alternative mRNA Splicing Events in Cervical Cancer
BACKGROUND: Increasing evidence suggests that aberrant alternative splicing (AS) events are associated with progression of cancer. This study evaluated the prognostic value and clarify the role of AS events in cervical cancer (CC). METHODS: Based on RNA-seq AS event data and clinical information of...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2020
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7394696/ https://www.ncbi.nlm.nih.gov/pubmed/32793282 http://dx.doi.org/10.3389/fgene.2020.00726 |
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author | Shao, Xiang-yang Dong, Jin Zhang, Han Wu, Ying-song Zheng, Lei |
author_facet | Shao, Xiang-yang Dong, Jin Zhang, Han Wu, Ying-song Zheng, Lei |
author_sort | Shao, Xiang-yang |
collection | PubMed |
description | BACKGROUND: Increasing evidence suggests that aberrant alternative splicing (AS) events are associated with progression of cancer. This study evaluated the prognostic value and clarify the role of AS events in cervical cancer (CC). METHODS: Based on RNA-seq AS event data and clinical information of CC patients in The Cancer Genome Atlas (TCGA) database, we sought to identify prognosis-related AS events in this setting. We selected several survival-associated AS events to construct a prognostic predictor for CC through the least absolute shrinkage and selection operator (LASSO) and multivariate Cox regression. Moreover, Kyoto Encyclopedia of Genes and Genomes and Gene Ontology analyses were performed on genes with prognosis-related AS events and constructed an AS-splicing factors (SFs) regulatory network. RESULTS: 2770 AS events were significantly correlated with overall survival (OS). The area under the curve (AUC) values of receiver-operator characteristic curve (ROC) for the final prognostic predictor were 0.926, 0.946 and 0.902 at 3, 5, and 10 years, respectively. These values indicated efficiency in prognostic risk stratification for patients with CC. The final prognostic predictor was an independent predictor of OS (HR: 1.24; 95% CI: 1.020–1.504; P < 0.05). The AS-SFs correlation network may reveal an underlying regulatory mechanism of AS events. CONCLUSION: AS events are essential participants in the prognosis of CC and hold great potentials for the prognostic stratification and development of treatment strategy. |
format | Online Article Text |
id | pubmed-7394696 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-73946962020-08-12 Prognostic Value and Potential Role of Alternative mRNA Splicing Events in Cervical Cancer Shao, Xiang-yang Dong, Jin Zhang, Han Wu, Ying-song Zheng, Lei Front Genet Genetics BACKGROUND: Increasing evidence suggests that aberrant alternative splicing (AS) events are associated with progression of cancer. This study evaluated the prognostic value and clarify the role of AS events in cervical cancer (CC). METHODS: Based on RNA-seq AS event data and clinical information of CC patients in The Cancer Genome Atlas (TCGA) database, we sought to identify prognosis-related AS events in this setting. We selected several survival-associated AS events to construct a prognostic predictor for CC through the least absolute shrinkage and selection operator (LASSO) and multivariate Cox regression. Moreover, Kyoto Encyclopedia of Genes and Genomes and Gene Ontology analyses were performed on genes with prognosis-related AS events and constructed an AS-splicing factors (SFs) regulatory network. RESULTS: 2770 AS events were significantly correlated with overall survival (OS). The area under the curve (AUC) values of receiver-operator characteristic curve (ROC) for the final prognostic predictor were 0.926, 0.946 and 0.902 at 3, 5, and 10 years, respectively. These values indicated efficiency in prognostic risk stratification for patients with CC. The final prognostic predictor was an independent predictor of OS (HR: 1.24; 95% CI: 1.020–1.504; P < 0.05). The AS-SFs correlation network may reveal an underlying regulatory mechanism of AS events. CONCLUSION: AS events are essential participants in the prognosis of CC and hold great potentials for the prognostic stratification and development of treatment strategy. Frontiers Media S.A. 2020-07-10 /pmc/articles/PMC7394696/ /pubmed/32793282 http://dx.doi.org/10.3389/fgene.2020.00726 Text en Copyright © 2020 Shao, Dong, Zhang, Wu and Zheng. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Shao, Xiang-yang Dong, Jin Zhang, Han Wu, Ying-song Zheng, Lei Prognostic Value and Potential Role of Alternative mRNA Splicing Events in Cervical Cancer |
title | Prognostic Value and Potential Role of Alternative mRNA Splicing Events in Cervical Cancer |
title_full | Prognostic Value and Potential Role of Alternative mRNA Splicing Events in Cervical Cancer |
title_fullStr | Prognostic Value and Potential Role of Alternative mRNA Splicing Events in Cervical Cancer |
title_full_unstemmed | Prognostic Value and Potential Role of Alternative mRNA Splicing Events in Cervical Cancer |
title_short | Prognostic Value and Potential Role of Alternative mRNA Splicing Events in Cervical Cancer |
title_sort | prognostic value and potential role of alternative mrna splicing events in cervical cancer |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7394696/ https://www.ncbi.nlm.nih.gov/pubmed/32793282 http://dx.doi.org/10.3389/fgene.2020.00726 |
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