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A mixed culture of bacterial cells enables an economic DNA storage on a large scale

DNA emerged as a novel potential material for mass data storage, offering the possibility to cheaply solve a great data storage problem. Large oligonucleotide pools demonstrated high potential of large-scale data storage in test tube, meanwhile, living cell with high fidelity in information replicat...

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Autores principales: Hao, Min, Qiao, Hongyan, Gao, Yanmin, Wang, Zhaoguan, Qiao, Xin, Chen, Xin, Qi, Hao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7395121/
https://www.ncbi.nlm.nih.gov/pubmed/32737399
http://dx.doi.org/10.1038/s42003-020-01141-7
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author Hao, Min
Qiao, Hongyan
Gao, Yanmin
Wang, Zhaoguan
Qiao, Xin
Chen, Xin
Qi, Hao
author_facet Hao, Min
Qiao, Hongyan
Gao, Yanmin
Wang, Zhaoguan
Qiao, Xin
Chen, Xin
Qi, Hao
author_sort Hao, Min
collection PubMed
description DNA emerged as a novel potential material for mass data storage, offering the possibility to cheaply solve a great data storage problem. Large oligonucleotide pools demonstrated high potential of large-scale data storage in test tube, meanwhile, living cell with high fidelity in information replication. Here we show a mixed culture of bacterial cells carrying a large oligo pool that was assembled in a high-copy-number plasmid was presented as a stable material for large-scale data storage. The underlying principle was explored by deep bioinformatic analysis. Although homology assembly showed sequence context dependent bias, the large oligonucleotide pools in the mixed culture were constant over multiple successive passages. Finally, over ten thousand distinct oligos encompassing 2304 Kbps encoding 445 KB digital data, were stored in cells, the largest storage in living cells reported so far and present a previously unreported approach for bridging the gap between in vitro and in vivo systems.
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spelling pubmed-73951212020-08-18 A mixed culture of bacterial cells enables an economic DNA storage on a large scale Hao, Min Qiao, Hongyan Gao, Yanmin Wang, Zhaoguan Qiao, Xin Chen, Xin Qi, Hao Commun Biol Article DNA emerged as a novel potential material for mass data storage, offering the possibility to cheaply solve a great data storage problem. Large oligonucleotide pools demonstrated high potential of large-scale data storage in test tube, meanwhile, living cell with high fidelity in information replication. Here we show a mixed culture of bacterial cells carrying a large oligo pool that was assembled in a high-copy-number plasmid was presented as a stable material for large-scale data storage. The underlying principle was explored by deep bioinformatic analysis. Although homology assembly showed sequence context dependent bias, the large oligonucleotide pools in the mixed culture were constant over multiple successive passages. Finally, over ten thousand distinct oligos encompassing 2304 Kbps encoding 445 KB digital data, were stored in cells, the largest storage in living cells reported so far and present a previously unreported approach for bridging the gap between in vitro and in vivo systems. Nature Publishing Group UK 2020-07-31 /pmc/articles/PMC7395121/ /pubmed/32737399 http://dx.doi.org/10.1038/s42003-020-01141-7 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Hao, Min
Qiao, Hongyan
Gao, Yanmin
Wang, Zhaoguan
Qiao, Xin
Chen, Xin
Qi, Hao
A mixed culture of bacterial cells enables an economic DNA storage on a large scale
title A mixed culture of bacterial cells enables an economic DNA storage on a large scale
title_full A mixed culture of bacterial cells enables an economic DNA storage on a large scale
title_fullStr A mixed culture of bacterial cells enables an economic DNA storage on a large scale
title_full_unstemmed A mixed culture of bacterial cells enables an economic DNA storage on a large scale
title_short A mixed culture of bacterial cells enables an economic DNA storage on a large scale
title_sort mixed culture of bacterial cells enables an economic dna storage on a large scale
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7395121/
https://www.ncbi.nlm.nih.gov/pubmed/32737399
http://dx.doi.org/10.1038/s42003-020-01141-7
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