Cargando…
Screening and Identification of Therapeutic Targets for Pulmonary Arterial Hypertension Through Microarray Technology
Pulmonary arterial hypertension (PAH) is a rare but fatal disease characterized by vascular cell proliferation; the pathogenesis of PAH has yet to be fully elucidated. Publicly available genetic data were downloaded from the Gene Expression Omnibus (GEO) database, and gene set enrichment analysis (G...
Autores principales: | , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7396553/ https://www.ncbi.nlm.nih.gov/pubmed/32849793 http://dx.doi.org/10.3389/fgene.2020.00782 |
_version_ | 1783565608502165504 |
---|---|
author | Li, Qing Meng, LingBing Liu, DePing |
author_facet | Li, Qing Meng, LingBing Liu, DePing |
author_sort | Li, Qing |
collection | PubMed |
description | Pulmonary arterial hypertension (PAH) is a rare but fatal disease characterized by vascular cell proliferation; the pathogenesis of PAH has yet to be fully elucidated. Publicly available genetic data were downloaded from the Gene Expression Omnibus (GEO) database, and gene set enrichment analysis (GSEA) was used to determine significant differences in gene expression between tissues with PAH and healthy lung tissues. Differentially expressed genes (DEGs) were identified using the online tool, GEO2R, and functional annotation of DEGs was performed using Gene Ontology (GO) and the Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis. Next, the construction and module analysis of the protein–protein interaction (PPI) network and verification of the expression level of hub genes was performed. Finally, prediction and enrichment analysis of microRNAs associated with the hub genes was carried out. A total of 110 DEGs were detected by screening PAH and healthy lung samples. The expression of nine genes [polo-like kinase 4 (PLK4), centromere protein U, kinesin family member 20B, structural maintenance of chromosome 2 (SMC2), abnormal spindle microtubule assembly, Fanconi Anemia complementation group I, kinesin family member 18A, spindle apparatus coiled-coil protein 1, and MIS18 binding protein 1] was elevated in PAH; this was statistically significant compared with their expression in healthy lung tissue, and they were identified as hub genes. GO and KEGG analysis showed that the variations in DEGs were abundant in DNA-templated transcription, sister chromatid cohesion, mitotic nuclear division, cell proliferation, and regulation of the actin cytoskeleton. In conclusion, this study has successfully identified hub genes and key pathways of PAH, with a total of 110 DEGs and nine hub genes related to PAH, especially the PLK4 and SMC2 genes, thus providing important clues for the in-depth understanding of the molecular mechanism of PAH and providing potential therapeutic targets. |
format | Online Article Text |
id | pubmed-7396553 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-73965532020-08-25 Screening and Identification of Therapeutic Targets for Pulmonary Arterial Hypertension Through Microarray Technology Li, Qing Meng, LingBing Liu, DePing Front Genet Genetics Pulmonary arterial hypertension (PAH) is a rare but fatal disease characterized by vascular cell proliferation; the pathogenesis of PAH has yet to be fully elucidated. Publicly available genetic data were downloaded from the Gene Expression Omnibus (GEO) database, and gene set enrichment analysis (GSEA) was used to determine significant differences in gene expression between tissues with PAH and healthy lung tissues. Differentially expressed genes (DEGs) were identified using the online tool, GEO2R, and functional annotation of DEGs was performed using Gene Ontology (GO) and the Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis. Next, the construction and module analysis of the protein–protein interaction (PPI) network and verification of the expression level of hub genes was performed. Finally, prediction and enrichment analysis of microRNAs associated with the hub genes was carried out. A total of 110 DEGs were detected by screening PAH and healthy lung samples. The expression of nine genes [polo-like kinase 4 (PLK4), centromere protein U, kinesin family member 20B, structural maintenance of chromosome 2 (SMC2), abnormal spindle microtubule assembly, Fanconi Anemia complementation group I, kinesin family member 18A, spindle apparatus coiled-coil protein 1, and MIS18 binding protein 1] was elevated in PAH; this was statistically significant compared with their expression in healthy lung tissue, and they were identified as hub genes. GO and KEGG analysis showed that the variations in DEGs were abundant in DNA-templated transcription, sister chromatid cohesion, mitotic nuclear division, cell proliferation, and regulation of the actin cytoskeleton. In conclusion, this study has successfully identified hub genes and key pathways of PAH, with a total of 110 DEGs and nine hub genes related to PAH, especially the PLK4 and SMC2 genes, thus providing important clues for the in-depth understanding of the molecular mechanism of PAH and providing potential therapeutic targets. Frontiers Media S.A. 2020-07-22 /pmc/articles/PMC7396553/ /pubmed/32849793 http://dx.doi.org/10.3389/fgene.2020.00782 Text en Copyright © 2020 Li, Meng and Liu. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Li, Qing Meng, LingBing Liu, DePing Screening and Identification of Therapeutic Targets for Pulmonary Arterial Hypertension Through Microarray Technology |
title | Screening and Identification of Therapeutic Targets for Pulmonary Arterial Hypertension Through Microarray Technology |
title_full | Screening and Identification of Therapeutic Targets for Pulmonary Arterial Hypertension Through Microarray Technology |
title_fullStr | Screening and Identification of Therapeutic Targets for Pulmonary Arterial Hypertension Through Microarray Technology |
title_full_unstemmed | Screening and Identification of Therapeutic Targets for Pulmonary Arterial Hypertension Through Microarray Technology |
title_short | Screening and Identification of Therapeutic Targets for Pulmonary Arterial Hypertension Through Microarray Technology |
title_sort | screening and identification of therapeutic targets for pulmonary arterial hypertension through microarray technology |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7396553/ https://www.ncbi.nlm.nih.gov/pubmed/32849793 http://dx.doi.org/10.3389/fgene.2020.00782 |
work_keys_str_mv | AT liqing screeningandidentificationoftherapeutictargetsforpulmonaryarterialhypertensionthroughmicroarraytechnology AT menglingbing screeningandidentificationoftherapeutictargetsforpulmonaryarterialhypertensionthroughmicroarraytechnology AT liudeping screeningandidentificationoftherapeutictargetsforpulmonaryarterialhypertensionthroughmicroarraytechnology |