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Weak Interactions and Conformational Changes in Core-Protonated A(2)- and A(x)-Type Porphyrin Dications
Individual chemical motifs are known to introduce structural distortions to the porphyrin macrocycle, be it in the core or at the periphery of the macrocycle. The interplay when introducing two or more of these known structural motifs has been scarcely explored and is not necessarily simply additive...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7397311/ https://www.ncbi.nlm.nih.gov/pubmed/32668713 http://dx.doi.org/10.3390/molecules25143195 |
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author | Kingsbury, Christopher J. Flanagan, Keith J. Eckhardt, Hans-Georg Kielmann, Marc Senge, Mathias O. |
author_facet | Kingsbury, Christopher J. Flanagan, Keith J. Eckhardt, Hans-Georg Kielmann, Marc Senge, Mathias O. |
author_sort | Kingsbury, Christopher J. |
collection | PubMed |
description | Individual chemical motifs are known to introduce structural distortions to the porphyrin macrocycle, be it in the core or at the periphery of the macrocycle. The interplay when introducing two or more of these known structural motifs has been scarcely explored and is not necessarily simply additive; these structural distortions have a chance to compound or negate to introduce new structural types. To this end, a series of compounds with complementary peripheral (5,15-disubstitution) and core (acidification) substitution patterns were investigated. The single-crystal X-ray structures of 18 5,15-diphenylporphyrin, 5,15-diphenylporphyrindi-ium diacid, and related compounds are reported, including the first example of a 5,15-dialkylporphyrindi-ium. Normal-coordinate structural decomposition (NSD) analysis is used for a detailed analysis of the conformation of the porphyrin subunit within the crystal structures. An elongation of porphyrin macrocycles along the C(5),C(15)- axis (B(2g) symmetry) is observed in all of the free base porphyrins and porphyrin dications; distance across the core is around 0.3 Å in the free base and diacid compounds, and more than doubled in 5,15-dipentylporphyrin and 5,15-dipentylporphyrindi-ium diacid. While the free base porphyrins are largely planar, a large out-of-plane distortion can be observed in 5,15-diphenylporphyrin diacids, with the expected “projective saddle” shape characteristic for such systems. The combination of these two distortions (B(2u) and B(2g)) from regular porphyrin structure results in a macrocycle best characterized in the chiral point-group D(2). A rare structural type of a cis-hydrogen bond chelate is observed for 5,15-dipentylporphyrindi-ium diacid, which adopts an achiral C(2v) symmetry. Crystallographic data indicate that the protonated porphyrin core forms hydrogen bonding chelates (N-H⋯X⋯H-N) to counter-anions. Weaker interactions, such as induced intramolecular C-H⋯O interactions from the porphyrin periphery are described, with distances characteristic of charge-assisted interactions. This paper offers a conceptual framework for accessing porphyrin macrocycles with designable distortion and symmetry, useful for the selective perturbation of electronic states and a design-for-application approach to solid state porphyrin materials. |
format | Online Article Text |
id | pubmed-7397311 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-73973112020-08-16 Weak Interactions and Conformational Changes in Core-Protonated A(2)- and A(x)-Type Porphyrin Dications Kingsbury, Christopher J. Flanagan, Keith J. Eckhardt, Hans-Georg Kielmann, Marc Senge, Mathias O. Molecules Article Individual chemical motifs are known to introduce structural distortions to the porphyrin macrocycle, be it in the core or at the periphery of the macrocycle. The interplay when introducing two or more of these known structural motifs has been scarcely explored and is not necessarily simply additive; these structural distortions have a chance to compound or negate to introduce new structural types. To this end, a series of compounds with complementary peripheral (5,15-disubstitution) and core (acidification) substitution patterns were investigated. The single-crystal X-ray structures of 18 5,15-diphenylporphyrin, 5,15-diphenylporphyrindi-ium diacid, and related compounds are reported, including the first example of a 5,15-dialkylporphyrindi-ium. Normal-coordinate structural decomposition (NSD) analysis is used for a detailed analysis of the conformation of the porphyrin subunit within the crystal structures. An elongation of porphyrin macrocycles along the C(5),C(15)- axis (B(2g) symmetry) is observed in all of the free base porphyrins and porphyrin dications; distance across the core is around 0.3 Å in the free base and diacid compounds, and more than doubled in 5,15-dipentylporphyrin and 5,15-dipentylporphyrindi-ium diacid. While the free base porphyrins are largely planar, a large out-of-plane distortion can be observed in 5,15-diphenylporphyrin diacids, with the expected “projective saddle” shape characteristic for such systems. The combination of these two distortions (B(2u) and B(2g)) from regular porphyrin structure results in a macrocycle best characterized in the chiral point-group D(2). A rare structural type of a cis-hydrogen bond chelate is observed for 5,15-dipentylporphyrindi-ium diacid, which adopts an achiral C(2v) symmetry. Crystallographic data indicate that the protonated porphyrin core forms hydrogen bonding chelates (N-H⋯X⋯H-N) to counter-anions. Weaker interactions, such as induced intramolecular C-H⋯O interactions from the porphyrin periphery are described, with distances characteristic of charge-assisted interactions. This paper offers a conceptual framework for accessing porphyrin macrocycles with designable distortion and symmetry, useful for the selective perturbation of electronic states and a design-for-application approach to solid state porphyrin materials. MDPI 2020-07-13 /pmc/articles/PMC7397311/ /pubmed/32668713 http://dx.doi.org/10.3390/molecules25143195 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Kingsbury, Christopher J. Flanagan, Keith J. Eckhardt, Hans-Georg Kielmann, Marc Senge, Mathias O. Weak Interactions and Conformational Changes in Core-Protonated A(2)- and A(x)-Type Porphyrin Dications |
title | Weak Interactions and Conformational Changes in Core-Protonated A(2)- and A(x)-Type Porphyrin Dications |
title_full | Weak Interactions and Conformational Changes in Core-Protonated A(2)- and A(x)-Type Porphyrin Dications |
title_fullStr | Weak Interactions and Conformational Changes in Core-Protonated A(2)- and A(x)-Type Porphyrin Dications |
title_full_unstemmed | Weak Interactions and Conformational Changes in Core-Protonated A(2)- and A(x)-Type Porphyrin Dications |
title_short | Weak Interactions and Conformational Changes in Core-Protonated A(2)- and A(x)-Type Porphyrin Dications |
title_sort | weak interactions and conformational changes in core-protonated a(2)- and a(x)-type porphyrin dications |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7397311/ https://www.ncbi.nlm.nih.gov/pubmed/32668713 http://dx.doi.org/10.3390/molecules25143195 |
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