Cargando…

Comparative data analsysis of two multi-drug resistant homoserine lactone and rhamnolipid producing Pseudomonas aeruginosa from diabetic foot infected patient

Pseudomonas aeruginosa generally forms strong biofilm during chronic condition of wound. The whole mechanism of biofilm formation works in tandem with quorum sensing circuit of the organism in order to produce virulence. Here we report the draft genome sequence of two diabetic foot ulcer Pseudomonas...

Descripción completa

Detalles Bibliográficos
Autores principales: Srivastava, Prakhar, Gomathinayagam, Sankaranarayanan, Easwaran, Nalini, Sankar, Gowri, Padmavathi, E., Shankar, Manoharan, Gothandam, Kodiveri M., Sivashanmugam, Karthikeyan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7397398/
https://www.ncbi.nlm.nih.gov/pubmed/32775579
http://dx.doi.org/10.1016/j.dib.2020.106071
_version_ 1783565771212849152
author Srivastava, Prakhar
Gomathinayagam, Sankaranarayanan
Easwaran, Nalini
Sankar, Gowri
Padmavathi, E.
Shankar, Manoharan
Gothandam, Kodiveri M.
Sivashanmugam, Karthikeyan
author_facet Srivastava, Prakhar
Gomathinayagam, Sankaranarayanan
Easwaran, Nalini
Sankar, Gowri
Padmavathi, E.
Shankar, Manoharan
Gothandam, Kodiveri M.
Sivashanmugam, Karthikeyan
author_sort Srivastava, Prakhar
collection PubMed
description Pseudomonas aeruginosa generally forms strong biofilm during chronic condition of wound. The whole mechanism of biofilm formation works in tandem with quorum sensing circuit of the organism in order to produce virulence. Here we report the draft genome sequence of two diabetic foot ulcer Pseudomonas aeruginosa isolates (VIT PC 7 and VIT PC 9) displaying homoserine lactone, rhamnolipid producing, biofilm phenotype and antibiotic resistance genes related to carbapenem, aminoglycoside, beta- lactamase and tetracycline resistance. The whole genome sequencing library was prepared according to the Oxford Nanopore's SQK-LSK108 kit protocol on Oxford Nanopore's Minion platform. The 7.1 Mb and 6.3-Mb draft genome sequence with GC content of 65.8% and 66.4% respectively provides insight into their resistance mechanism and virulence factors.
format Online
Article
Text
id pubmed-7397398
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-73973982020-08-06 Comparative data analsysis of two multi-drug resistant homoserine lactone and rhamnolipid producing Pseudomonas aeruginosa from diabetic foot infected patient Srivastava, Prakhar Gomathinayagam, Sankaranarayanan Easwaran, Nalini Sankar, Gowri Padmavathi, E. Shankar, Manoharan Gothandam, Kodiveri M. Sivashanmugam, Karthikeyan Data Brief Biochemistry, Genetics and Molecular Biology Pseudomonas aeruginosa generally forms strong biofilm during chronic condition of wound. The whole mechanism of biofilm formation works in tandem with quorum sensing circuit of the organism in order to produce virulence. Here we report the draft genome sequence of two diabetic foot ulcer Pseudomonas aeruginosa isolates (VIT PC 7 and VIT PC 9) displaying homoserine lactone, rhamnolipid producing, biofilm phenotype and antibiotic resistance genes related to carbapenem, aminoglycoside, beta- lactamase and tetracycline resistance. The whole genome sequencing library was prepared according to the Oxford Nanopore's SQK-LSK108 kit protocol on Oxford Nanopore's Minion platform. The 7.1 Mb and 6.3-Mb draft genome sequence with GC content of 65.8% and 66.4% respectively provides insight into their resistance mechanism and virulence factors. Elsevier 2020-07-25 /pmc/articles/PMC7397398/ /pubmed/32775579 http://dx.doi.org/10.1016/j.dib.2020.106071 Text en © 2020 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Biochemistry, Genetics and Molecular Biology
Srivastava, Prakhar
Gomathinayagam, Sankaranarayanan
Easwaran, Nalini
Sankar, Gowri
Padmavathi, E.
Shankar, Manoharan
Gothandam, Kodiveri M.
Sivashanmugam, Karthikeyan
Comparative data analsysis of two multi-drug resistant homoserine lactone and rhamnolipid producing Pseudomonas aeruginosa from diabetic foot infected patient
title Comparative data analsysis of two multi-drug resistant homoserine lactone and rhamnolipid producing Pseudomonas aeruginosa from diabetic foot infected patient
title_full Comparative data analsysis of two multi-drug resistant homoserine lactone and rhamnolipid producing Pseudomonas aeruginosa from diabetic foot infected patient
title_fullStr Comparative data analsysis of two multi-drug resistant homoserine lactone and rhamnolipid producing Pseudomonas aeruginosa from diabetic foot infected patient
title_full_unstemmed Comparative data analsysis of two multi-drug resistant homoserine lactone and rhamnolipid producing Pseudomonas aeruginosa from diabetic foot infected patient
title_short Comparative data analsysis of two multi-drug resistant homoserine lactone and rhamnolipid producing Pseudomonas aeruginosa from diabetic foot infected patient
title_sort comparative data analsysis of two multi-drug resistant homoserine lactone and rhamnolipid producing pseudomonas aeruginosa from diabetic foot infected patient
topic Biochemistry, Genetics and Molecular Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7397398/
https://www.ncbi.nlm.nih.gov/pubmed/32775579
http://dx.doi.org/10.1016/j.dib.2020.106071
work_keys_str_mv AT srivastavaprakhar comparativedataanalsysisoftwomultidrugresistanthomoserinelactoneandrhamnolipidproducingpseudomonasaeruginosafromdiabeticfootinfectedpatient
AT gomathinayagamsankaranarayanan comparativedataanalsysisoftwomultidrugresistanthomoserinelactoneandrhamnolipidproducingpseudomonasaeruginosafromdiabeticfootinfectedpatient
AT easwarannalini comparativedataanalsysisoftwomultidrugresistanthomoserinelactoneandrhamnolipidproducingpseudomonasaeruginosafromdiabeticfootinfectedpatient
AT sankargowri comparativedataanalsysisoftwomultidrugresistanthomoserinelactoneandrhamnolipidproducingpseudomonasaeruginosafromdiabeticfootinfectedpatient
AT padmavathie comparativedataanalsysisoftwomultidrugresistanthomoserinelactoneandrhamnolipidproducingpseudomonasaeruginosafromdiabeticfootinfectedpatient
AT shankarmanoharan comparativedataanalsysisoftwomultidrugresistanthomoserinelactoneandrhamnolipidproducingpseudomonasaeruginosafromdiabeticfootinfectedpatient
AT gothandamkodiverim comparativedataanalsysisoftwomultidrugresistanthomoserinelactoneandrhamnolipidproducingpseudomonasaeruginosafromdiabeticfootinfectedpatient
AT sivashanmugamkarthikeyan comparativedataanalsysisoftwomultidrugresistanthomoserinelactoneandrhamnolipidproducingpseudomonasaeruginosafromdiabeticfootinfectedpatient