Cargando…
Comparative data analsysis of two multi-drug resistant homoserine lactone and rhamnolipid producing Pseudomonas aeruginosa from diabetic foot infected patient
Pseudomonas aeruginosa generally forms strong biofilm during chronic condition of wound. The whole mechanism of biofilm formation works in tandem with quorum sensing circuit of the organism in order to produce virulence. Here we report the draft genome sequence of two diabetic foot ulcer Pseudomonas...
Autores principales: | , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7397398/ https://www.ncbi.nlm.nih.gov/pubmed/32775579 http://dx.doi.org/10.1016/j.dib.2020.106071 |
_version_ | 1783565771212849152 |
---|---|
author | Srivastava, Prakhar Gomathinayagam, Sankaranarayanan Easwaran, Nalini Sankar, Gowri Padmavathi, E. Shankar, Manoharan Gothandam, Kodiveri M. Sivashanmugam, Karthikeyan |
author_facet | Srivastava, Prakhar Gomathinayagam, Sankaranarayanan Easwaran, Nalini Sankar, Gowri Padmavathi, E. Shankar, Manoharan Gothandam, Kodiveri M. Sivashanmugam, Karthikeyan |
author_sort | Srivastava, Prakhar |
collection | PubMed |
description | Pseudomonas aeruginosa generally forms strong biofilm during chronic condition of wound. The whole mechanism of biofilm formation works in tandem with quorum sensing circuit of the organism in order to produce virulence. Here we report the draft genome sequence of two diabetic foot ulcer Pseudomonas aeruginosa isolates (VIT PC 7 and VIT PC 9) displaying homoserine lactone, rhamnolipid producing, biofilm phenotype and antibiotic resistance genes related to carbapenem, aminoglycoside, beta- lactamase and tetracycline resistance. The whole genome sequencing library was prepared according to the Oxford Nanopore's SQK-LSK108 kit protocol on Oxford Nanopore's Minion platform. The 7.1 Mb and 6.3-Mb draft genome sequence with GC content of 65.8% and 66.4% respectively provides insight into their resistance mechanism and virulence factors. |
format | Online Article Text |
id | pubmed-7397398 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-73973982020-08-06 Comparative data analsysis of two multi-drug resistant homoserine lactone and rhamnolipid producing Pseudomonas aeruginosa from diabetic foot infected patient Srivastava, Prakhar Gomathinayagam, Sankaranarayanan Easwaran, Nalini Sankar, Gowri Padmavathi, E. Shankar, Manoharan Gothandam, Kodiveri M. Sivashanmugam, Karthikeyan Data Brief Biochemistry, Genetics and Molecular Biology Pseudomonas aeruginosa generally forms strong biofilm during chronic condition of wound. The whole mechanism of biofilm formation works in tandem with quorum sensing circuit of the organism in order to produce virulence. Here we report the draft genome sequence of two diabetic foot ulcer Pseudomonas aeruginosa isolates (VIT PC 7 and VIT PC 9) displaying homoserine lactone, rhamnolipid producing, biofilm phenotype and antibiotic resistance genes related to carbapenem, aminoglycoside, beta- lactamase and tetracycline resistance. The whole genome sequencing library was prepared according to the Oxford Nanopore's SQK-LSK108 kit protocol on Oxford Nanopore's Minion platform. The 7.1 Mb and 6.3-Mb draft genome sequence with GC content of 65.8% and 66.4% respectively provides insight into their resistance mechanism and virulence factors. Elsevier 2020-07-25 /pmc/articles/PMC7397398/ /pubmed/32775579 http://dx.doi.org/10.1016/j.dib.2020.106071 Text en © 2020 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Biochemistry, Genetics and Molecular Biology Srivastava, Prakhar Gomathinayagam, Sankaranarayanan Easwaran, Nalini Sankar, Gowri Padmavathi, E. Shankar, Manoharan Gothandam, Kodiveri M. Sivashanmugam, Karthikeyan Comparative data analsysis of two multi-drug resistant homoserine lactone and rhamnolipid producing Pseudomonas aeruginosa from diabetic foot infected patient |
title | Comparative data analsysis of two multi-drug resistant homoserine lactone and rhamnolipid producing Pseudomonas aeruginosa from diabetic foot infected patient |
title_full | Comparative data analsysis of two multi-drug resistant homoserine lactone and rhamnolipid producing Pseudomonas aeruginosa from diabetic foot infected patient |
title_fullStr | Comparative data analsysis of two multi-drug resistant homoserine lactone and rhamnolipid producing Pseudomonas aeruginosa from diabetic foot infected patient |
title_full_unstemmed | Comparative data analsysis of two multi-drug resistant homoserine lactone and rhamnolipid producing Pseudomonas aeruginosa from diabetic foot infected patient |
title_short | Comparative data analsysis of two multi-drug resistant homoserine lactone and rhamnolipid producing Pseudomonas aeruginosa from diabetic foot infected patient |
title_sort | comparative data analsysis of two multi-drug resistant homoserine lactone and rhamnolipid producing pseudomonas aeruginosa from diabetic foot infected patient |
topic | Biochemistry, Genetics and Molecular Biology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7397398/ https://www.ncbi.nlm.nih.gov/pubmed/32775579 http://dx.doi.org/10.1016/j.dib.2020.106071 |
work_keys_str_mv | AT srivastavaprakhar comparativedataanalsysisoftwomultidrugresistanthomoserinelactoneandrhamnolipidproducingpseudomonasaeruginosafromdiabeticfootinfectedpatient AT gomathinayagamsankaranarayanan comparativedataanalsysisoftwomultidrugresistanthomoserinelactoneandrhamnolipidproducingpseudomonasaeruginosafromdiabeticfootinfectedpatient AT easwarannalini comparativedataanalsysisoftwomultidrugresistanthomoserinelactoneandrhamnolipidproducingpseudomonasaeruginosafromdiabeticfootinfectedpatient AT sankargowri comparativedataanalsysisoftwomultidrugresistanthomoserinelactoneandrhamnolipidproducingpseudomonasaeruginosafromdiabeticfootinfectedpatient AT padmavathie comparativedataanalsysisoftwomultidrugresistanthomoserinelactoneandrhamnolipidproducingpseudomonasaeruginosafromdiabeticfootinfectedpatient AT shankarmanoharan comparativedataanalsysisoftwomultidrugresistanthomoserinelactoneandrhamnolipidproducingpseudomonasaeruginosafromdiabeticfootinfectedpatient AT gothandamkodiverim comparativedataanalsysisoftwomultidrugresistanthomoserinelactoneandrhamnolipidproducingpseudomonasaeruginosafromdiabeticfootinfectedpatient AT sivashanmugamkarthikeyan comparativedataanalsysisoftwomultidrugresistanthomoserinelactoneandrhamnolipidproducingpseudomonasaeruginosafromdiabeticfootinfectedpatient |