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Evaluating crystallographic likelihood functions using numerical quadratures

Intensity-based likelihood functions in crystallographic applications have the potential to enhance the quality of structures derived from marginal diffraction data. Their usage, however, is complicated by the ability to efficiently compute these target functions. Here, a numerical quadrature is dev...

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Detalles Bibliográficos
Autores principales: Zwart, Petrus H., Perryman, Elliott D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7397490/
https://www.ncbi.nlm.nih.gov/pubmed/32744256
http://dx.doi.org/10.1107/S2059798320008372
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author Zwart, Petrus H.
Perryman, Elliott D.
author_facet Zwart, Petrus H.
Perryman, Elliott D.
author_sort Zwart, Petrus H.
collection PubMed
description Intensity-based likelihood functions in crystallographic applications have the potential to enhance the quality of structures derived from marginal diffraction data. Their usage, however, is complicated by the ability to efficiently compute these target functions. Here, a numerical quadrature is developed that allows the rapid evaluation of intensity-based likelihood functions in crystallographic applications. By using a sequence of change-of-variable transformations, including a nonlinear domain-compression operation, an accurate, robust and efficient quadrature is constructed. The approach is flexible and can incorporate different noise models with relative ease.
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spelling pubmed-73974902020-08-11 Evaluating crystallographic likelihood functions using numerical quadratures Zwart, Petrus H. Perryman, Elliott D. Acta Crystallogr D Struct Biol Research Papers Intensity-based likelihood functions in crystallographic applications have the potential to enhance the quality of structures derived from marginal diffraction data. Their usage, however, is complicated by the ability to efficiently compute these target functions. Here, a numerical quadrature is developed that allows the rapid evaluation of intensity-based likelihood functions in crystallographic applications. By using a sequence of change-of-variable transformations, including a nonlinear domain-compression operation, an accurate, robust and efficient quadrature is constructed. The approach is flexible and can incorporate different noise models with relative ease. International Union of Crystallography 2020-07-27 /pmc/articles/PMC7397490/ /pubmed/32744256 http://dx.doi.org/10.1107/S2059798320008372 Text en © Zwart & Perryman 2020 http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Research Papers
Zwart, Petrus H.
Perryman, Elliott D.
Evaluating crystallographic likelihood functions using numerical quadratures
title Evaluating crystallographic likelihood functions using numerical quadratures
title_full Evaluating crystallographic likelihood functions using numerical quadratures
title_fullStr Evaluating crystallographic likelihood functions using numerical quadratures
title_full_unstemmed Evaluating crystallographic likelihood functions using numerical quadratures
title_short Evaluating crystallographic likelihood functions using numerical quadratures
title_sort evaluating crystallographic likelihood functions using numerical quadratures
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7397490/
https://www.ncbi.nlm.nih.gov/pubmed/32744256
http://dx.doi.org/10.1107/S2059798320008372
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