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Evaluating crystallographic likelihood functions using numerical quadratures
Intensity-based likelihood functions in crystallographic applications have the potential to enhance the quality of structures derived from marginal diffraction data. Their usage, however, is complicated by the ability to efficiently compute these target functions. Here, a numerical quadrature is dev...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7397490/ https://www.ncbi.nlm.nih.gov/pubmed/32744256 http://dx.doi.org/10.1107/S2059798320008372 |
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author | Zwart, Petrus H. Perryman, Elliott D. |
author_facet | Zwart, Petrus H. Perryman, Elliott D. |
author_sort | Zwart, Petrus H. |
collection | PubMed |
description | Intensity-based likelihood functions in crystallographic applications have the potential to enhance the quality of structures derived from marginal diffraction data. Their usage, however, is complicated by the ability to efficiently compute these target functions. Here, a numerical quadrature is developed that allows the rapid evaluation of intensity-based likelihood functions in crystallographic applications. By using a sequence of change-of-variable transformations, including a nonlinear domain-compression operation, an accurate, robust and efficient quadrature is constructed. The approach is flexible and can incorporate different noise models with relative ease. |
format | Online Article Text |
id | pubmed-7397490 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-73974902020-08-11 Evaluating crystallographic likelihood functions using numerical quadratures Zwart, Petrus H. Perryman, Elliott D. Acta Crystallogr D Struct Biol Research Papers Intensity-based likelihood functions in crystallographic applications have the potential to enhance the quality of structures derived from marginal diffraction data. Their usage, however, is complicated by the ability to efficiently compute these target functions. Here, a numerical quadrature is developed that allows the rapid evaluation of intensity-based likelihood functions in crystallographic applications. By using a sequence of change-of-variable transformations, including a nonlinear domain-compression operation, an accurate, robust and efficient quadrature is constructed. The approach is flexible and can incorporate different noise models with relative ease. International Union of Crystallography 2020-07-27 /pmc/articles/PMC7397490/ /pubmed/32744256 http://dx.doi.org/10.1107/S2059798320008372 Text en © Zwart & Perryman 2020 http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Research Papers Zwart, Petrus H. Perryman, Elliott D. Evaluating crystallographic likelihood functions using numerical quadratures |
title | Evaluating crystallographic likelihood functions using numerical quadratures |
title_full | Evaluating crystallographic likelihood functions using numerical quadratures |
title_fullStr | Evaluating crystallographic likelihood functions using numerical quadratures |
title_full_unstemmed | Evaluating crystallographic likelihood functions using numerical quadratures |
title_short | Evaluating crystallographic likelihood functions using numerical quadratures |
title_sort | evaluating crystallographic likelihood functions using numerical quadratures |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7397490/ https://www.ncbi.nlm.nih.gov/pubmed/32744256 http://dx.doi.org/10.1107/S2059798320008372 |
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