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Beyond ranking nodes: Predicting epidemic outbreak sizes by network centralities

Identifying important nodes for disease spreading is a central topic in network epidemiology. We investigate how well the position of a node, characterized by standard network measures, can predict its epidemiological importance in any graph of a given number of nodes. This is in contrast to other s...

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Detalles Bibliográficos
Autores principales: Bucur, Doina, Holme, Petter
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7398553/
https://www.ncbi.nlm.nih.gov/pubmed/32697781
http://dx.doi.org/10.1371/journal.pcbi.1008052
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author Bucur, Doina
Holme, Petter
author_facet Bucur, Doina
Holme, Petter
author_sort Bucur, Doina
collection PubMed
description Identifying important nodes for disease spreading is a central topic in network epidemiology. We investigate how well the position of a node, characterized by standard network measures, can predict its epidemiological importance in any graph of a given number of nodes. This is in contrast to other studies that deal with the easier prediction problem of ranking nodes by their epidemic importance in given graphs. As a benchmark for epidemic importance, we calculate the exact expected outbreak size given a node as the source. We study exhaustively all graphs of a given size, so do not restrict ourselves to certain generative models for graphs, nor to graph data sets. Due to the large number of possible nonisomorphic graphs of a fixed size, we are limited to ten-node graphs. We find that combinations of two or more centralities are predictive (R(2) scores of 0.91 or higher) even for the most difficult parameter values of the epidemic simulation. Typically, these successful combinations include one normalized spectral centrality (such as PageRank or Katz centrality) and one measure that is sensitive to the number of edges in the graph.
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spelling pubmed-73985532020-08-14 Beyond ranking nodes: Predicting epidemic outbreak sizes by network centralities Bucur, Doina Holme, Petter PLoS Comput Biol Research Article Identifying important nodes for disease spreading is a central topic in network epidemiology. We investigate how well the position of a node, characterized by standard network measures, can predict its epidemiological importance in any graph of a given number of nodes. This is in contrast to other studies that deal with the easier prediction problem of ranking nodes by their epidemic importance in given graphs. As a benchmark for epidemic importance, we calculate the exact expected outbreak size given a node as the source. We study exhaustively all graphs of a given size, so do not restrict ourselves to certain generative models for graphs, nor to graph data sets. Due to the large number of possible nonisomorphic graphs of a fixed size, we are limited to ten-node graphs. We find that combinations of two or more centralities are predictive (R(2) scores of 0.91 or higher) even for the most difficult parameter values of the epidemic simulation. Typically, these successful combinations include one normalized spectral centrality (such as PageRank or Katz centrality) and one measure that is sensitive to the number of edges in the graph. Public Library of Science 2020-07-22 /pmc/articles/PMC7398553/ /pubmed/32697781 http://dx.doi.org/10.1371/journal.pcbi.1008052 Text en © 2020 Bucur, Holme http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Bucur, Doina
Holme, Petter
Beyond ranking nodes: Predicting epidemic outbreak sizes by network centralities
title Beyond ranking nodes: Predicting epidemic outbreak sizes by network centralities
title_full Beyond ranking nodes: Predicting epidemic outbreak sizes by network centralities
title_fullStr Beyond ranking nodes: Predicting epidemic outbreak sizes by network centralities
title_full_unstemmed Beyond ranking nodes: Predicting epidemic outbreak sizes by network centralities
title_short Beyond ranking nodes: Predicting epidemic outbreak sizes by network centralities
title_sort beyond ranking nodes: predicting epidemic outbreak sizes by network centralities
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7398553/
https://www.ncbi.nlm.nih.gov/pubmed/32697781
http://dx.doi.org/10.1371/journal.pcbi.1008052
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