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Beyond ranking nodes: Predicting epidemic outbreak sizes by network centralities
Identifying important nodes for disease spreading is a central topic in network epidemiology. We investigate how well the position of a node, characterized by standard network measures, can predict its epidemiological importance in any graph of a given number of nodes. This is in contrast to other s...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7398553/ https://www.ncbi.nlm.nih.gov/pubmed/32697781 http://dx.doi.org/10.1371/journal.pcbi.1008052 |
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author | Bucur, Doina Holme, Petter |
author_facet | Bucur, Doina Holme, Petter |
author_sort | Bucur, Doina |
collection | PubMed |
description | Identifying important nodes for disease spreading is a central topic in network epidemiology. We investigate how well the position of a node, characterized by standard network measures, can predict its epidemiological importance in any graph of a given number of nodes. This is in contrast to other studies that deal with the easier prediction problem of ranking nodes by their epidemic importance in given graphs. As a benchmark for epidemic importance, we calculate the exact expected outbreak size given a node as the source. We study exhaustively all graphs of a given size, so do not restrict ourselves to certain generative models for graphs, nor to graph data sets. Due to the large number of possible nonisomorphic graphs of a fixed size, we are limited to ten-node graphs. We find that combinations of two or more centralities are predictive (R(2) scores of 0.91 or higher) even for the most difficult parameter values of the epidemic simulation. Typically, these successful combinations include one normalized spectral centrality (such as PageRank or Katz centrality) and one measure that is sensitive to the number of edges in the graph. |
format | Online Article Text |
id | pubmed-7398553 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-73985532020-08-14 Beyond ranking nodes: Predicting epidemic outbreak sizes by network centralities Bucur, Doina Holme, Petter PLoS Comput Biol Research Article Identifying important nodes for disease spreading is a central topic in network epidemiology. We investigate how well the position of a node, characterized by standard network measures, can predict its epidemiological importance in any graph of a given number of nodes. This is in contrast to other studies that deal with the easier prediction problem of ranking nodes by their epidemic importance in given graphs. As a benchmark for epidemic importance, we calculate the exact expected outbreak size given a node as the source. We study exhaustively all graphs of a given size, so do not restrict ourselves to certain generative models for graphs, nor to graph data sets. Due to the large number of possible nonisomorphic graphs of a fixed size, we are limited to ten-node graphs. We find that combinations of two or more centralities are predictive (R(2) scores of 0.91 or higher) even for the most difficult parameter values of the epidemic simulation. Typically, these successful combinations include one normalized spectral centrality (such as PageRank or Katz centrality) and one measure that is sensitive to the number of edges in the graph. Public Library of Science 2020-07-22 /pmc/articles/PMC7398553/ /pubmed/32697781 http://dx.doi.org/10.1371/journal.pcbi.1008052 Text en © 2020 Bucur, Holme http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Bucur, Doina Holme, Petter Beyond ranking nodes: Predicting epidemic outbreak sizes by network centralities |
title | Beyond ranking nodes: Predicting epidemic outbreak sizes by network centralities |
title_full | Beyond ranking nodes: Predicting epidemic outbreak sizes by network centralities |
title_fullStr | Beyond ranking nodes: Predicting epidemic outbreak sizes by network centralities |
title_full_unstemmed | Beyond ranking nodes: Predicting epidemic outbreak sizes by network centralities |
title_short | Beyond ranking nodes: Predicting epidemic outbreak sizes by network centralities |
title_sort | beyond ranking nodes: predicting epidemic outbreak sizes by network centralities |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7398553/ https://www.ncbi.nlm.nih.gov/pubmed/32697781 http://dx.doi.org/10.1371/journal.pcbi.1008052 |
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